miR-Intess: block1572

block1572_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	16	20	5arm	1	nd	0.24	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------UCUGAAA------------------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------CTCTGAAAATAGGCAGTCTAC-----------------------------------------------------------------------------------------------------	21	1
celegans	--TGGAAG----------CTGGAAATTTCTCTGAAAATAGGCAGTCTACCGGAC---------ATCTCAGGTCTTACATAGGTAGTTTGTAATTGGAATCCGGAGATTGCAATTT--AATTTTCAATTTCCGTTTTTCAT----------
cremanei	----------------------------ATCTGAAAATAGGATTTTT----------------GTCTCAAAAATT------GGATTTTTTGTC------TCAAAAATCGGAATTTTGGACTAAAAATCTGCAATTTTCAGCCCAAAACTT
cbriggsae	GATGGAGGTCTCCTAATTTTATTGATTTTTCTGAAAATTGTGAGTTTTTTGGGATTTTTTTGAATTTCGAAATTTTTTCAAAAAATTTTTTTCAAGTTTTCAAATTTTTGGATTTTTAAATGAGAGT-----ATTTTCATC---------
	********* * * * * * *** * * * * **** * * * * ******
celegans	(((((( .(((((((.....(((((((..(((((((.(((((. .((.(((...(((((.........)))))))))).))))))))))))..... .)))))))))))))).)))))).	0.990 -34.20
cremanei	..((((((((.(((((((( (((.(((((.(( .(((((((.... ..))))))).)).)))))))).))))))))...))))))))..........	1.000 -26.70
cbriggsae	((((((((((((.....((((..(((((...((((((((..(((((((((((((...(((((.....)))))...)))))))))))))......)))))))).......)))))..))))...))). )))))))))	0.934 -29.50

celegans	chromosome:II:3246178:3246294:-1	intergenic ## {SimpF: WRM0630dD06 -1 fosmid}
cremanei	chromosome:chrUn:144178829:144178985:-1	intergenic ## {SimpF: trf}
cbriggsae	chromosome:chrUn:6796066:6796201:-1	Same_strand\|Intronic_coding\|NM_061817