logoC.elegans small RNAs


miR expression

block4864_cand

block4864_cand

Cloning frequencies
absoluteCE1
block4864_cand 3arm1
normalizedCE1
block4864_cand 3arm0.001
block4864_cand relative cloning frequencies

block4864 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.007nono0.21/0.2124/24/1.000.0
0.0
1
0
1
0
14
9
3arm
1
nd
0.21
3
11nana
block4864 hairpin
  readsmiRBase family seed
seed------------------------------------------------------------------UUAAUAG------------------------------1novel
  lencloning frequencies
   CE1
 -----------------------------------------------------------------GTTAATAGTGATTGATAATATTAG--------------241
celegansaattagcattttcaggaatagtttattgagcacagtaactgtccaatgttgtacctgcattggttGTTAATAGTGATTGATAATATTAGaatatatgttgatt 
 ******************************************************************************************************* 
celegans(((((((((.(((...((((..(((((((.(((..((((...(((((((.......)))))))..))))...))).))))))))))).)))...)))))))))0.970 -25.20

celeganschromosome:IV:14937718:14937820:-1intergenic ## {SimpF: WRM0637dE03 -1 fosmid,WRM0637cB12 -1 fosmid,WRM0641aG05 -1 fosmid,WRM0612aC11 -1 fosmid}


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