miR-Intess: block5734

block5734_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.30/0.30	20/20/1.00	0.0	0.0	2	0	1	0	28	8	5arm	1	nd	0.25	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------GGCAGAU------------------------------------------------------------------------------------------------	2	miR-72
		len	cloning frequencies
			CE1
	----------------------------AGGCAGAT------------CAATCAATTTTT------------------------------------------------------------------------	20	2
celegans	TGTATATTGTTTAGTCCATTCAGTTTGTAGGCAGAT------------CAATCAATTTTTAGGTTTATATAAATAATCCTAAAGTCGATTGCTCTACCCACAAAAAGTAATGTTGACTTGAAGTTATGTATA
cremanei	----------------------------AGGCAGAT------------CGG--AGATCGTAGATATTCAGAAGCCAAT-----GTCACTT-CTCCATC---------------------------ACCT---
cbrenneri	TGCCGGCA--------------------AGGCAGATGCCGGTAAATGCCGGTAAAATCGCAAATTT-TACCGGTAAACTT---ACCGGTT-TTTTACC---------------------------GTCGGTA
	******** * * * * * * * * * ** * * *
celegans	(((((((..((.((((((((...(((((.((.(((. (((((...(((((((.((((....)))).)))))))..))))).))).)).)))))....))))..)))).))....)))))))	1.000 -29.80
cremanei	(((..((( .(( (((..((.((((((........))) ))))).) ))))))) .)))	1.000 -14.10
cbrenneri	(((((((. .((.(((.((((((((.((((((((((((.....)))) ))))))))...)) )))))). .))).)) )))))))	0.999 -37.50

celegans	chromosome:IV:10914560:10914679:1	intergenic ## {SimpF: WRM0618aB12 1 fosmid,WRM063cG12 1 fosmid,WRM0639cD01 1 fosmid}
cremanei	chromosome:chrUn:135048028:135048187:1	Same_strand\|Boundary_non-coding\|NM_070423
cbrenneri	chromosome:chrUn:177580941:177581020:1	intergenic