C.elegans small RNAs

miR-Intess™

miR classification

miR expression

block659_cand

block659_cand

Cloning frequencies
absolute	CE1
block659_cand 5arm	0.500
normalized	CE1
block659_cand 5arm	0.000

block659_cand relative cloning frequencies

block659 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.65/0.65	20/20/1.00	0.0	0.0	1	0	1	0	9	20	5arm	2	nd	0.20	2	1	1	na	na

block659 hairpin

		reads	miRBase family seed
seed	----------UCCAGUA---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------GTCCAGTAGCGGCAGCTTGC---------------------------------------------------------------------------	20	1
celegans	ctttaacttGTCCAGTAGCGGCAGCTTGCttacgagcagcattttcccgaatcgccttcacctctgcctcctcagcatcctgttgctccttgacaatcgtaagt
	********************************************************************************************************
	------------------------------------------------------------------------------------------------------------------	Y74C9A.4a Y74C9A.4 Y74C9A.4
	------------------------------------------------------------------------------------------------------------------	Y74C9A.4b Y74C9A.4 Y74C9A.4
celegans	(((....(((((.((.((((((((..((((...((((((........((...)).........)))).))...))))..)))))))).)).)))))....))).	1.000 -27.73

celegans

chromosome:I:23262:23365:1

Opposite_strand|Intronic_coding|Y74C9A.4b|Y74C9A.4 ## Y74C9A.4|protein_coding|Y74C9A.4|Y74C9A.4b [Source:RefSeq_peptide;Acc:NP_490662] ## {SimpF: yk383e12 1 RNAi}

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