miR-Intess: block8180

block8180_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	18	6	3arm	1	0	0.23	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------ACGGCGG--------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------AACGGCGGCAATTTGTTTACAG------------------	22	1
celegans	CGAAGGAACTGAATCAAGGTAAGCAAATTCCCGTCATTTTCTGGAAATATTTTGAAACGGCGGCAATTTGTTTACAGAAAGTGAGCGGTTCGTTT
cremanei	----------------TATCGCACGAGCTGCCGGAATCTC-----ATCATGTGATCACGGCGGAAATCTG--TGGTATAAGTG------------
ppacificus	----------------AGCTATG---ATTGTCGCCTTCTTCAATATTCATATTCAGACGGCGGTCA------CATCGATAGTT------------
	* ** * * ** * ******* * ***
	++++>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>	Y59E1B.1 Y59E1B.1 Y59E1B.1
celegans	.(((.((((((..(((..(((((((((((.(((((..((((..((....))..)))).))))).)))))))))))......))).)))))).)))	1.000 -30.20
cremanei	(((((((.((.((((((..(((.( (...)).)))..))))))...)))) )))))......	1.000 -22.40
ppacificus	((((((( (((((((((.(((..((((....)))).))).))))).)) .))).))))))	1.000 -15.40

celegans	chromosome:X:1879617:1879711:1	Same_strand\|Intronic_coding\|Y59E1B.1\|Y59E1B.1 ## Y59E1B.1\|protein_coding\|Y59E1B.1\|Y59E1B.1 [Source:RefSeq_peptide;Acc:NP_508345] ## {SimpF: Y59E1B.B 1 Expression_profile,WRM066aD05 1 fosmid,WRM0616aC07 1 fosmid,WRM0632cB03 1 fosmid,WRM0624cF08 1 fosmid}
cremanei	chromosome:chrUn:32708129:32708188:-1	Opposite_strand\|Intronic_coding\|NM_001043076 ## Same_strand\|Intronic_coding\|NM_021280
ppacificus	chromosome:chrUn:88859116:88859250:-1	Opposite_strand\|Intronic_coding\|NM_118882 ## Same_strand\|Intronic_coding\|NM_002870