C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-lsy-6

cel-lsy-6

Cloning frequencies
absolute	CE1
cel-lsy-6 3arm	3
normalized	CE1
cel-lsy-6 3arm	0.002

cel-lsy-6 relative cloning frequencies

block7269 (miRBase cel-lsy-6) [miRNAknown_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-lsy-6	0.001	no	no	0.38/0.38	21/21/1.00	0.0	0.0	3	0	1	0	4	5	3arm	1	nd	0.10	1	3	1	na	na

block7269 hairpin

		reads	miRBase family seed
seed	------------------------------------------------------------------------------UUUGUAU---------------------------------------------	3	lsy-6
		len	cloning frequencies
			CE1
cel-lsy-6	-----------------------------------------------------------------------------TTTTGTATGAGACGCATTT------------------CG--------------	21	3
celegans	---------------------CCATCAAATGCGTCTAGTATCAAAATCATGTA----AAAACTGTAAAA----CAGATTTTGTATGAGACGCATTT------------------CGATGA----------
cbriggsae	-----------------CCTTCCACAGAATGCGTCCAGTATCAAAATCACA------TCAAAGAGAATACGG-TGGATTTTGTATGAGACGCATTC----------------CGTGGCGGG---------
cjaponica	GATTAATT------------GCCACTGGATGCGTCGAATAACAAAATCGAGTGTTCTTACTTTGAAGTATAA-CTGATTTTGTATGAGACGCATTC------------------CAGTGGCATTCTGATC
cbrenneri	TATTGCTGTTCAAAAAACTTGCCACAGAATGCGTCGAATATCAAAATCATG------TCAA----AATATGGATAGATTTTGTATGAGACGCATTTCCGTGGCTGCAATGAACGTGGCGGTG--------
cremanei	TTTTGATT---------TCCGCCACCGACTGCTTCGAATACCAAAATCATGGG----TAATCTACAGTATGC-CAGATTTTGTATGAGACGCATTC----------------AGTGGCGGGAAGACAAGA
	* * ** * ***** * * ******************** *
celegans	.((((((((((((((.(((.(((((((.(((. ...........) )))))))))))).)))))))))) .)))).	1.000 -26.90
cbriggsae	(((.((((.(((((((((..(((.(((((((.(( ((...........)) ))))))))))))..))))))))) .)))).)))	1.000 -36.30
cjaponica	(((((..( (((((((((((((((..((.((((((((.(((.....((((....))))..) ))))))))))))..))))))).) ))))))))...)))))	0.998 -44.30
cbrenneri	((((((((((((........(((((.(((((((((..(((.(((((((.(( ((.. ......))))))))))))))..)))))))))..))))).....)))))..)))))))	0.995 -41.62
cremanei	(((((.(( ((((((((.((.(((.((..(((.(((((((...(( ((..........))) ).))))))))))..)).))).)) .))))))))))..)))))	1.000 -38.20

celegans	chromosome:V:10647206:10647278:1	intergenic ## {SimpF: WRM061cD11 1 fosmid,WRM0635bF11 1 fosmid,WRM0628bA07 1 fosmid} ## {MIR: cel-lsy-6}
cbriggsae	chromosome:chrV:7813062:7813142:-1	Same_strand\|Intronic_coding\|NM_073462 ## Opposite_strand\|Intronic_coding\|NM_070877 ## {MIR: cbr-lsy-6}
cjaponica	chromosome:chrUn:8397009:8397107:1	Opposite_strand\|Intronic_coding\|NM_022073
cbrenneri	chromosome:chrUn:66936444:66936555:1	intergenic
cremanei	chromosome:chrUn:57701747:57701846:1	Same_strand\|Intronic_coding\|NM_001114256

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