cel-mir-1
| absolute | CE1 |
| cel-mir-1 5arm | 8 |
| cel-mir-1 3arm | 270 |
| normalized | CE1 |
| cel-mir-1 5arm | 0.006 |
| cel-mir-1 3arm | 0.189 |
sblock4 (miRBase cel-mir-1) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-1 | 0.001 | no | no | 0.28/0.47 | 18/21/0.85 | 0.0 0.0 | 0.8 0.0 | 8 223 | 0 0 | 1 1 | 0 0 | 20 16 | 5 7 | 5arm 3arm | 1 1 | nd nd | 0.14 0.10 | 2 1 | 278 | 1 | 1 | 1 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------------GGAAUGU--------------------------------------------- | 265 | miR-1 |
| seed | ---------------------------------AUACUUC------------------------------------------------------------------------------------------------- | 8 | novel |
| seed | --------------------------------------------------------------------------------------GAAUGUA-------------------------------------------- | 4 | novel |
| seed | ------------------------------------------------------------------------------------UGGAAUG---------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------------------------------------------------------TGGAATGTAAAGAAGTATGT--------------------------------- | 20 | 223 | |
| ------------------------------------------------------------------------------------TGGAATGTAAAGAAGTATG---------------------------------- | 19 | 36 | |
| --------------------------------CATACTTCCT-TACATGCCCAT----------------------------------------------------------------------------------- | 21 | 5 | |
| cel-miR-1 | ------------------------------------------------------------------------------------TGGAATGTAAAGAAGTATGTA-------------------------------- | 21 | 4 |
| --------------------------------CATACTTCCT-TACATGCCC------------------------------------------------------------------------------------- | 19 | 3 | |
| -------------------------------------------------------------------------------------GGAATGTAAAGAAGTATGTA-------------------------------- | 20 | 3 | |
| ------------------------------------------------------------------------------------TGGAATGTAAAGAAGTAT----------------------------------- | 18 | 2 | |
| -------------------------------------------------------------------------------------GGAATGTAAAGAAGTATGT--------------------------------- | 19 | 1 | |
| -----------------------------------------------------------------------------------ATGGAATGTAAAGAAGTATG---------------------------------- | 20 | 1 | |
| celegans | AAAGTGACCGTACCG------------AGCTGCATACTTCCT-TACATGCCCATACTATA--------TCA---TAAATGGATATGGAATGTAAAGAAGTATGTAGAACGG---------------GGTGGTAGT-- | ||
| cbriggsae | -----TGCTGTGCCG------------AGCTGCATACTTCCT-TACATGCCCATACTGTA--------CTG---TGAATGGATATGGAATGTAAAGAAGTATGTAGAACGGAATCT----------AACGGCG---- | ||
| cjaponica | ----TCGCCGTGCCG------------AGCTGCATACTTCCT-TGCATACCCATACTTGATCCCCTGGTCG---GACAGAGATATGGAATGTAAAGAAGTATGTAGAGCGGT------------------------- | ||
| cbrenneri | ----ATGCCGTGCCG------------AGCTGCATGCTTCTTCTACATGCCCATACTATA--------TCG---TAAATGGATATGGAATGTAAAGAAGTATGTAGAACGGAAAACACGAAACAAAAACGGCAT--- | ||
| ppacificus | AGAATCTCTCTCTCACTCCTCATTCACCGTTCCGTACTTCTT-TGCAGCCCCATACTTGC--------CCGCATGAAGTGGTTATGGAATGTAAAGAAGTATGT--AATGGTCGAGGCGAGAGCACCACTAGAATCT | ||
| cremanei | ------GCTGTGCCG------------AGCTGCATACTTCCT-TACATGCCCATACTATA--------TCA---GTAATGGATATGGAATGTAAAGAAGTATGTAGAACGGTTTTG-------AAAAACGGC----- | ||
| * * * * * * * **** * * ** ******** * ********************** * ** | |||
| celegans | ......((((..((( ..(((((((((((.( (((((..(((((((((. ... ...)))).))))).)))))).)))))))))))..))) ..))))... | 1.000 -41.40 | |
| cbriggsae | .(((((.((( ..(((((((((((.( (((((..(((((((((. ... ...)))).))))).)))))).)))))))))))..)))..... .))))). | 1.000 -40.00 | |
| cjaponica | .......(((( ..(((((((((((.( (((((..((((((((..(((.......) ))..))).))))).)))))).)))))))))))..)))) | 1.000 -39.20 | |
| cbrenneri | (((((((.((( ..(((((((((((((.(((((..(((((((((. ... ...)))).))))).))))))))))))))))))..)))................))))))) | 0.994 -43.13 | |
| ppacificus | (((.(((..(((((...((((....((((((.(((((((((( ((((...(((((..... ((((.....)))).)))))..)))))))))))))). )))))).)))).))))).......))).))) | 0.988 -44.90 | |
| cremanei | ((((((((( ..(((((((((((.( (((((..(((((((((. ... ...)))).))))).)))))).)))))))))))..)))).... ....))))) | 0.990 -39.30 |
| celegans | chromosome:I:6172664:6172759:-1 | intergenic ## {SimpF: WRM0637aE07 -1 fosmid,WRM0638cC08 -1 fosmid,WRM065bH05 -1 fosmid,WRM0626aC03 -1 fosmid} ## {MIR: cel-mir-1} |
| cbriggsae | chromosome:chrI:7435815:7435908:-1 | Opposite_strand|Intronic_coding|NM_001087279 ## Same_strand|Intronic_coding|NM_001075644 ## {MIR: cbr-mir-1} |
| cjaponica | chromosome:chrUn:124179219:124179310:1 | intergenic |
| cbrenneri | chromosome:chrUn:90239915:90240021:1 | Opposite_strand|Intronic_coding|NM_001123230 ## Same_strand|Intronic_coding|NM_009930 |
| ppacificus | chromosome:chrUn:9699697:9699822:-1 | intergenic |
| cremanei | chromosome:chrUn:145319807:145319901:1 | intergenic |
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