miR-Intess: cel-mir-1018

cel-mir-1018

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-1018	0.001	no	no	0.41/0.41	22/22/1.00	nd	nd	0	0	0	0	0	3	3arm	1	0	0.14	2	0	0	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------GAGAGAU------------------------------	0	novel
		len	cloning frequencies

cel-miR-1018	--------------------------------------------------------------AGAGAGATCAT--------TGGACTTACAG--------	22
celegans	----GTAAGTT----------------CATGATTTCTCCCATATATTTT--------TCATGAGAGAGATCAT--------TGGACTTACAG--------
cremanei	TTTTGTAGTTG----------------ATCAATTTTTTGTACGGATTTT--------TC-CGAGAGAGATATA--------GCAATGCAAAG--------
cbriggsae	---------------------------AACGAATTTTCGAA---ATTCTCACCAAAATCAAAAGATAGA------------GAGATTTGGAATATTTGGA
ppacificus	----ATGGTCTGACTCTCTCTATTTGTCATGATCTCTCGTC---ACTCTGAC-----TGACAAGAGAGATCATTGAGAAATGAGATACGAAATGAGCAT-
	* * * * * * * * * * *
	>>>>> +++++++ ++++++++++++++++++++++ ++++++++++++++++ +++++++++++ >>>>>	Y59E1B.1 Y59E1B.1 Y59E1B.1
celegans	((((((( (((((((((((.(((....... ..))).))))))))). )))))))))..	1.000 -23.80
cremanei	.((((((.((( ....(((((((...((((.... )) )).)))))))... .))))))))).	0.998 -13.80
cbriggsae	..(((((((((((( .(((((.................)) ))).))))))).)))))..	1.000 -11.13
ppacificus	(((.((......((((.((((.((((((((((((((( (....... ))))..)))))))))).)).))))))))........)).)))	0.999 -27.74

celegans	chromosome:X:1879453:1879508:1	Same_strand\|Intronic_coding\|Y59E1B.1\|Y59E1B.1 ## Y59E1B.1\|protein_coding\|Y59E1B.1\|Y59E1B.1 [Source:RefSeq_peptide;Acc:NP_508345] ## {SimpF: Y59E1B.B 1 Expression_profile,WRM066aD05 1 fosmid,WRM0616aC07 1 fosmid,WRM0632cB03 1 fosmid,WRM0624cF08 1 fosmid} ## {MIR: cel-mir-1018}
cremanei	chromosome:chrUn:5614830:5614925:-1	intergenic
cbriggsae	chromosome:chrV:11080045:11080140:-1	Same_strand\|Intronic_coding\|NM_017182 ## Opposite_strand\|Intronic_coding\|NM_001041377 ## Opposite_strand\|Boundary_non-coding\|NM_073057
ppacificus	chromosome:chrUn:57741498:57741584:-1	intergenic