cel-mir-1019
sblock9 (miRBase cel-mir-1019) [miRNAknown_lenNOK_multiarm_DicerNOK_shortStem_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-1019 | 0.029 | no | no | 0.36/0.42 | 24/25/0.50 | nd nd | nd nd | 0 0 | 0 0 | 0 0 | 0 0 | 0 0 | 3 7 | 5arm 3arm | 1 1 | 1 0 | 0.20 0.35 | 2 5 | 0 | 0 | 3 | 0 |
| reads | miRBase family seed | |
| seed | --------------UGAGCAU--------------------------------------------------------------------------------------------------- | 0 | novel |
| seed | --------------------------------------------------------------------------------UGUAAU-----U---------------------------- | 0 | novel |
| len | cloning frequencies | |
| cel-miR-1019 | -------------------------------------------------------------------------------CTGTAAT-----TCCACATTG----------CTTTCCAG-- | 24 |
| cel-miR-1019* | -------------GTGAGCATTGTT---------------------CGAGTTTCATTTT------------------------------------------------------------- | 25 |
| celegans | -------------GTGAGCATTGTT---------------------CGAGTTTCATTTTTAATAAAATTTATTTAAAAACTGTAAT-----TCCACATTG----------CTTTCCAG-- | |
| cremanei | -------------GTGAGCATTGTA---------------------TGAGCCA-----------------ATCTGAAAAAACCTAC-----TTCAGGTTGAGAATACAGTTTTAA----- | |
| cjaponica | -------------GTGAGCATAGTT---------------------CGAGTTACAGTA------------ATCCAATGACTACTGT--ATCTCCACTTTG----------CTTTC----- | |
| cbrenneri | -------------GTGAGCATCGTT---------------------GGATTTATAGTTTTTTT-------TTCAAAAAATTCTAACTATAATCCACTTTG----------CTTAA----- | |
| ppacificus | TTGTTGAAGAACTGTGAGCATTATTGATCTTTGATCTTTTGAATTGTGAATCATATTTCGGAC-------ACCTGATCAGTCTAAT--TAGTGCTTTTGG----------TTTACAATGA | |
| ******** * ** * * * * * * ** | ||
| >>>>> ++++++++++++ ++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++ >>>>> | M04C9.5 M04C9.5 dyf-5 | |
| celegans | ..(((((.(((. .(((((.(((((((((..........))))))).)).))) )).))).)) )))..... | 1.000 -13.10 |
| cremanei | .((((.(((((( (....(( (((((((......... )))))))))...))))))))))). | 1.000 -14.80 |
| cjaponica | ..(((((.(((. .(((.((((((( .((....)).)))))) ).))).))).)) ))).. | 1.000 -19.40 |
| cbrenneri | .((((((..((. (((.((((((((..((( (....))))....)))))))))))))..)) )))). | 1.000 -17.10 |
| ppacificus | ((((((..((((((.((((((((.......((((((.((((((.((((...)))).)))))). ....))))))...... )))))))).))) ))).)))))) | 0.996 -23.82 |
| celegans | chromosome:I:9361588:9361656:1 | Same_strand|Intronic_coding|M04C9.5|M04C9.5 ## Same_strand|Boundary_coding|M04C9.5|M04C9.5 ## M04C9.5|protein_coding|dyf-5|dyf-5 encodes a putative MAP kinase orthologous to human MAK/ICK (OMIM:154235), Chlamydomonas reinhardtii LF4, and Leishmania mexicana MPK9. DYF-5 negatively regulates cilial length, restricts KAP-1 to middle ciliary segments, is required for normal localization of six IFT components, and is required for OSM-3 to comigrate normally with IFT particles. DYF-5 is also required for dye-filling of amphid and phasmid neurons and for normal chemotaxis, dauer formation, and male mating. DYF-5 is expressed in head neurons (including amphid neurons), tail neurons (including phasmid neurons), CAN cells, excretory canal neurons, posterior lateral ganglion neurons and in many male tail cells. dyf-5 mutant cilia are abnormally elongated, either failing to enter the amphid channel or accumulating IFT proteins at their distal ends, whereas DYF-5 overexpression results in truncated cilia. the dyf-5 promoter region contains an X-box, predicted to be bound and transcriptionally activated by DAF-19, and dyf-5 is regulated by DAF-19 in vivo. dyf-5 animals are slightly shorter than normal. [Source: WormBase] ## {SimpF: WRM0625aB10 1 fosmid,WRM0632bF02 1 fosmid,WRM0612aC09 1 fosmid,WRM064dG06 1 fosmid} ## {MIR: cel-mir-1019} |
| cremanei | chromosome:chrUn:17538323:17538431:1 | Opposite_strand|Intronic_coding|NM_059002 |
| cjaponica | chromosome:chrUn:95002809:95002917:-1 | Opposite_strand|Intronic_coding|NM_007674 ## Same_strand|Boundary_coding|NM_060092 ## Same_strand|Boundary_non-coding|NM_199946 |
| cbrenneri | chromosome:chrUn:140316700:140316808:-1 | Same_strand|Boundary_coding|NM_060092 ## Same_strand|Boundary_non-coding|NM_199946 |
| ppacificus | chromosome:chrUn:64451867:64451967:1 | Opposite_strand|Intronic_coding|NM_132581 ## Same_strand|Intronic_coding|NM_203770 |
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