miR-Intess: cel-mir-1020

cel-mir-1020

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-1020	0.001	no	no	0.28/0.33	18/22/0.75	0.2	1.1	9	0	1	0	0	-1	3arm	1	0	0.06	1	11	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------UUAUUCU-------------	8	novel
seed	-------------------------------------------------------------AUUAUUC--------------	3	novel
		len	cloning frequencies
			CE1
cel-miR-1020	-------------------------------------------------------------ATTATTCTGTGACACTTTCAG	21	5
	------------------------------------------------------------AATTATTCTGTGACACTTTC--	20	2
	-------------------------------------------------------------ATTATTCTGTGACACTTT---	18	2
	------------------------------------------------------------AATTATTCTGTGACACTTTCAG	22	1
	-------------------------------------------------------------ATTATTCTGTGACACTTTC--	19	1
celegans	GTAAGTGTTACA---GAATAATCTTAGACAAAACAACTAA--AATTAATG-------AAAAATTATTCTGTGACACTTTCAG
cbrenneri	TTGAAGTTTGTATTGGAATGATCTC-----CATTAACTAATTTTTTAGTGATTTTATAAACATTATTCATTGGAAACTTTAA
	* * ** * ** ** * **** * * ***** * ** *
	>>>>>++++++++++++ +++++++++++++++++++++++++ ++++++++ +++++++++++++++++++++++++>>>>>	T16G12.1 T16G12.1 T16G12.1
celegans	(.(((((((((( (((((((.................. ........ ....))))))))))))))))).)..	1.000 -19.01
cbrenneri	.((((((((.((...(((((((... .....(((((....)))))............)))))))..)).)))))))).	0.792 -14.25

celegans	chromosome:III:10047640:10047709:-1	Same_strand\|Boundary_coding\|T16G12.1\|T16G12.1 ## T16G12.1\|protein_coding\|T16G12.1\|T16G12.1 [Source:RefSeq_peptide;Acc:NP_499230] ## {SimpF: WRM0639bA05 -1 fosmid,WRM0616bB10 -1 fosmid,WRM0628dH06 -1 fosmid,WRM067aA12 -1 fosmid} ## {MIR: cel-mir-1020}
cbrenneri	chromosome:chrUn:100226582:100226691:1	intergenic