logoC.elegans small RNAs


miR expression

cel-mir-1021

cel-mir-1021

block5106 (miRBase cel-mir-1021) [miRNAknown_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBase cel-mir-10210.001nono0.44/0.4425/25/0.00nd
nd
0
0
0
0
14
3
5arm
1
nd
0.32
4
00nana
block5106 hairpin
  readsmiRBase family seed
seed---------------AGUGAGA---------------------------------------------------------------------------0novel
  lencloning frequencies
   
cel-miR-1021--------------AAGTGAGATCATGTGAAATCCTCGG----------------------------------------------------------25
celeganstactgttttgaaacAAGTGAGATCATGTGAAATCCTCGGagctcggagctttgaattttccaaatattcatatttaaattatttgtttcaaacagta 
 ************************************************************************************************* 
celegans((((((((.(((((((((((....(((((((....(((((((.....)))))))............))))))).....)))))))))))))))))))1.000 -28.69

celeganschromosome:IV:16473044:16473140:-1intergenic ## {SimpF: WRM0621bE04 -1 fosmid} ## {MIR: cel-mir-1021}


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