miR-Intess: cel-mir-1022

cel-mir-1022

Cloning frequencies
absolute	CE1
cel-mir-1022 5arm	27
normalized	CE1
cel-mir-1022 5arm	0.019

block7725 (miRBase cel-mir-1022) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-1022	0.001	no	no	0.41/0.45	20/24/1.00	0.0	1.4	25	0	1	0	14	1	5arm	1	nd	0.25	2	27	1	na	na

		reads	miRBase family seed
seed	---------------AGAUCAU--------------------------------------------------------------------------------	27	novel
		len	cloning frequencies
			CE1
	--------------AAGATCAT--------TGTTAGGACGCCATCT--------------------------------------------------------	24	10
cel-miR-1022	--------------AAGATCAT--------TGTTAGGACGCCATC---------------------------------------------------------	23	8
	--------------AAGATCAT--------TGTTAGGACGCC------------------------------------------------------------	20	7
	--------------AAGATCAT--------TGTTAGGACGCCAT----------------------------------------------------------	22	2
celegans	GGTCCAAAATCGGCAAGATCAT--------TGTTAGGACGCCATCTTGAAGCAA-----TATAAAGATGATAGTCCA-ATGATGATCCAGCTGTTCAAGGCT
cremanei	--------------AAGATCAT--------TGTTGCGATAT-----------------TGATAGAGATGAATATCGATATGATGATTAT-------------
cbriggsae	--------------AAGATCAT--------TGTTGTTCTCTAGTCATCGATTGAATGCTGCCAGAATTGGAGTTTCAACGTACGATCCA-------------
cbrenneri	--------------AAGATCATGTGAGTGATGACTTCATTTAATTTTGGGG--------ATCACTGCTCATTGTTCA-----TGATTCA-------------
cjaponica	--------------AAGATCAT--------TGAT---------TGGTGGATTGA----CTGTAATCGTGCCGATTGA---AATGGTCCA-------------
ppacificus	--------------AAGATCAT--------AGTT---------TATTGAGGTTT----CATTAAAATTGAATATTCATAGATTGGTCCC-------------
	******** * * * * * * *
celegans	((((......((((..(((((( ..((.((((..((((((....... ....))))))...))))) )..))))))..)))).....))))	1.000 -29.80
cremanei	..(((((( (((..(((((( (.((....)).)))))))..)))))))))..	1.000 -14.90
cbriggsae	..((((.. (((((..(((((((..((...............)))))))))...)))))...))))..	0.916 -13.76
cbrenneri	..((((((((((((..((((((((........))))) .)))..))))).....)) )))))..	1.000 -18.20
cjaponica	..(((((( (((( ((((((((((. ...))))).)))))))).. )))))))..	1.000 -15.60
ppacificus	..(((((. .((( ((.((((..(( ((.......))))..))))))))))))))..	1.000 -10.00

celegans	chromosome:X:6435382:6435469:-1	intergenic ## {SimpF: WRM061bC10 -1 fosmid,WRM0618aG06 -1 fosmid,WRM0632bC06 -1 fosmid,WRM0616bF06 -1 fosmid,WRM0612aH08 -1 fosmid,WRM0635bC02 -1 fosmid,WRM0624cB01 -1 fosmid} ## {MIR: cel-mir-1022}
cremanei	chromosome:chrUn:127506019:127506146:1	Opposite_strand\|Intronic_coding\|NM_005692
cbriggsae	chromosome:chrI_random:1455667:1455794:-1	Same_strand\|Intronic_coding\|NM_001105378 ## Opposite_strand\|Intronic_coding\|NM_069533 ## Same_strand\|Boundary_coding\|NM_058815
cbrenneri	chromosome:chrUn:20993626:20993753:1	Same_strand\|Boundary_coding\|NM_077289
cjaponica	chromosome:chrUn:68667524:68667651:-1	Same_strand\|Intronic_coding\|NM_065404
ppacificus	chromosome:chrUn:147901201:147901328:1	Opposite_strand\|Intronic_coding\|NM_001088036 ## {SimpF: trf}

miR-Intess™

cel-mir-1022

block7725 (miRBase cel-mir-1022) [miRNAknown_cloningHIGH_randfoldOK]