cel-mir-124
| absolute | CE1 |
| cel-mir-124 5arm | 1 |
| cel-mir-124 3arm | 5 |
| normalized | CE1 |
| cel-mir-124 5arm | 0.001 |
| cel-mir-124 3arm | 0.003 |
sblock47 (miRBase cel-mir-124) [miRNAknown_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-124 | 0.002 | no | no | 0.50/0.60 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 5 | 0 0 | 1 1 | 0 0 | 17 16 | 7 10 | 5arm 3arm | 1 1 | nd nd | 0.25 0.15 | 3 2 | 6 | 1 | -1 | 1 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------AAGGCAC------------------------------------------------ | 5 | miR-124 |
| seed | -------------------------------------------CAUGCAC----------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------------------------------TAAGGCACGCGGTGAATGCC------------------------------------ | 20 | 5 | |
| ------------------------------------------GCATGCACCCTAGTGACTTT----------------------------------------------------------------------------------- | 20 | 1 | |
| cel-miR-124 | -----------------------------------------------------------------------------------------TAAGGCACGCGGTGAATGCCA----------------------------------- | 21 | - |
| celegans | -------------------------GTCCCACTTGTCATCTGGCATGCACCCTAGTGACTTTAGTG----GACATCTAAGTCTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCCATGATGGG-------------------- | ||
| cbriggsae | --------ATGTCATTGATACATTTTTTCCAGTCGTCATATGGCGTCCACCTGAGTGACTTTAGTG----GACATGTATAGTTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCAATTCTGGGATTCAGAAGGTTGGTTTCAT | ||
| ppacificus | ----TGAAGGGTCGTTAAT----------------TCACTTCGCTTTCACC--GGTGACTTTAGTGCTTTGTCACAGAGAG-----AACTAAGGCACGCGGTGAATGCCAAGAG--AATAACGAATCCATCA------------- | ||
| cjaponica | ---------CTTCGTTAGC-CGATTGTCCCTGTTGTCATCTGGCGTCCACCTGAGTGACTTTAGTG----GACAATTTTTGGTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCAACCGGGGACTCGATTCTCGTGG------ | ||
| cbrenneri | -----ATTTTGTCATCGATACTAATGCCTCAGTTGTCATCTGGCATACACCTGAGTGACTTTAGTG----GACATCTGAAGTTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCAACTTGAGGTCTATTGTCGATAAGGT--- | ||
| cremanei | CTATTCTTATGTCACTGAT---------CCAGATGTCACTTGGCATACACCTGAGTGACTTTAGTG----GACATCTCAAGTTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCAATTCTGGAGACTTCTCAAAGGTTGG--- | ||
| *** * ** * **** ************ * ** ************************ * * * | |||
| +++++ +++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | C29E6.2 C29E6.2 trpa-1 | ||
| celegans | ..(((((..(((((.((((((.((((...(((.(((((((( (((......))))....))))))))))..)))).)))))).)))))...).)))) | 1.000 -40.00 | |
| cbriggsae | (((..((..((.......((((((..((((..((((((.((((...(((.(((((((( ((.((.....)).)))).)))))))))..)))).))))))..))))....))))))........))..))..))) | 0.987 -47.16 | |
| ppacificus | .((.((((((((.(( ((.(((.((.(((((( ((((.(((((((.(((((...))))).. .)))))))))).))))))).)).))).) )))))))).))).)). | 1.000 -44.10 | |
| cjaponica | ((.((..((. (((..((((((((((((((.((((((.((((...(((.(((((((( (((........)).))).)))))))))..)))).)))))).)))))))).))))))))).))..)).)) | 0.954 -53.70 | |
| cbrenneri | ((((((((..(((((.....((((((((((((((.((((((.((((...(((.(((((((( ((.((.....)).)))).)))))))))..)))).)))))).))))))))).))))).)))))..)))))))) | 1.000 -57.80 | |
| cremanei | (((..(((.((.......( (((((((((((.((((((.((((...(((.(((((((( ((.((.....)).)))).)))))))))..)))).)))))).))))))..)))))).......)))))..))) | 0.975 -49.94 |
| celegans | chromosome:IV:11871708:11871803:1 | Same_strand|Intronic_coding|C29E6.2|C29E6.2 ## C29E6.2|protein_coding|trpa-1|trpa-1 encodes a transient receptor potential (TRP) ion channel orthologous to the vertebrate and Drosophila TRPA1 channels. in C. elegans, trpa-1 activity is required for specific mechanosensory behaviors such as nose-touch avoidance and touch-mediated foraging. when expressed in mammalian cells, TRPA-1 exhibits channel activity in response to mechanical stimulation. TRPA-1::GFP reporters are expressed in a number of different cell types including sensory neurons, muscle, and epithelial cells. [Source: WormBase] ## {SimpF: WRM0637dH01 1 fosmid,WRM066aH02 1 fosmid,WRM0623aC08 1 fosmid,WRM063dF01 1 fosmid,WRM0634cA02 1 fosmid,WRM0620aE10 1 fosmid} ## {MIR: cel-mir-124} |
| cbriggsae | chromosome:chrIV:5050216:5050348:-1 | Opposite_strand|Intronic_coding|NM_168571 ## Same_strand|Intronic_coding|NM_001123230 ## {MIR: cbr-mir-124} |
| ppacificus | chromosome:chrUn:138694799:138694901:-1 | intergenic ## {SimpF: trf} |
| cjaponica | chromosome:chrUn:39137220:39137344:1 | Same_strand|Intronic_coding|NM_069848 ## Opposite_strand|Intronic_coding|NM_104618 |
| cbrenneri | chromosome:chrUn:107113354:107113486:-1 | Same_strand|Intronic_coding|NM_069848 |
| cremanei | chromosome:chrUn:80236599:80236727:1 | Same_strand|Intronic_coding|NM_069848 |
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