miR-Intess: cel-mir-1817

cel-mir-1817

Cloning frequencies
absolute	CE1
cel-mir-1817 5arm	213
normalized	CE1
cel-mir-1817 5arm	0.149

block492 (miRBase cel-mir-1817) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-1817	0.002	no	no	0.36/0.41	18/23/0.96	0.0	1.3	197	0	1	0	20	5	5arm	1	nd	0.15	1	213	1	na	na

		reads	miRBase family seed
seed	---------------------AGCCAAU--------------------------------------------------------------------------------------	209	novel
seed	-------------------------AAUGUCU----------------------------------------------------------------------------------	3	novel
seed	----------------------GCCAAUG-------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------TAGCCAATGTCTTCTCTATC--------------------------------------------------------------------------	20	110
cel-miR-1817	--------------------TAGCCAATGTCTTCTCTATCATG-----------------------------------------------------------------------	23	87
	--------------------TAGCCAATGTCTTCTCTA----------------------------------------------------------------------------	18	4
	--------------------TAGCCAATGTCTTCTCTATCAT------------------------------------------------------------------------	22	4
	------------------------CAATGTCTTCTCTATCATG-----------------------------------------------------------------------	19	3
	--------------------TAGCCAATGTCTTCTCTAT---------------------------------------------------------------------------	19	2
	--------------------TAGCCAATGTCTTCTCTATCA-------------------------------------------------------------------------	21	2
	---------------------AGCCAATGTCTTCTCTATCATG-----------------------------------------------------------------------	22	1
celegans	TGTACATTTCAATTTTCGAGTAGCCAATGTCTTCTCTATCATGCATTTTACAAATAATGAGTACATGATAG--TGAAA--TATTTGCTTCCTGAATTTC-----AGAGATGTTT
cbriggsae	--------------------AAGCCAATTTTT-------------CGTTGCTTCATCGGAGTACATGACTA-----------ACGCCGTCATGGAGAAC---GTAAAAGTGCAG
cbrenneri	--------------------TAGCCAATCGTT--------------------------GAGATTGTGATGAATTCGAAGAAAATTACTTCATAAA---------ACGATTGCTT
cjaponica	--------------------TAGCCAATTTGT------------------------CGAAATTTTTTGTCG---------AATTTTTGTCGACAAAATTTCGACAAATTTGTCA
ppacificus	--------------------TAGCCAATTGTT-----------------------AAGAAGGAAAAACTAG--CAAAAGTGATTTTTTTTCTGAGCAA------AATTGTGTTT
	******* * * * * **
celegans	...(((((((....((((.(.(((.(((((.(((.((((((((.((((..........)))).)))))))) .)))) )))).))).).)))).... .)))))))..	1.000 -27.30
cbriggsae	..((..(((((( ((((.(((((((((.((......... )).)))..))))))))) ).))))))))..	0.853 -16.30
cbrenneri	.((.(((((((( ....((((((..((((.......))))...))))))) ))))))))).	0.953 -12.00
cjaponica	..((.((((((( ((((((..((((((( (.......))))))))))))))))))))).))..	1.000 -23.40
ppacificus	.((((((((((( .(((((((((((((.. ....)))..)))))))))).)))). .)))).))).	1.000 -12.30

celegans	chromosome:I:10869363:10869467:-1	intergenic ## {SimpF: WRM0638bB08 -1 fosmid,WRM068aG01 -1 fosmid,WRM0629cD02 -1 fosmid} ## {MIR: cel-mir-1817}
cbriggsae	chromosome:chrX:7135776:7135920:1	Same_strand\|Intronic_coding\|NM_178660 ## Opposite_strand\|Intronic_coding\|NM_153821 ## {SimpF: trf}
cbrenneri	chromosome:chrUn:41649762:41649906:-1	Same_strand\|Intronic_coding\|NM_001056672 ## Opposite_strand\|Exonic_coding\|NM_001026725
cjaponica	chromosome:chrUn:88872449:88872593:1	intergenic ## {SimpF: trf}
ppacificus	chromosome:chrUn:155434944:155435088:-1	Same_strand\|Intronic_coding\|NM_001041377 ## Opposite_strand\|Intronic_coding\|NM_001077648

miR-Intess™

cel-mir-1817

block492 (miRBase cel-mir-1817) [miRNAknown_cloningHIGH_randfoldOK]