C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-1818

cel-mir-1818

block606 (miRBase cel-mir-1818) [miRNAknown_rep_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-1818	0.001	no	DNA	0.39/0.39	23/23/1.00	nd	nd	0	0	0	0	18	4	5arm	1	nd	0.17	1	0	0	na	na

block606 hairpin

		reads	miRBase family seed
seed	-------------------------------GUGGUCU----------------------------------------------------------------------------------------------	0	novel
		len	cloning frequencies

cel-miR-1818	------------------------------TGTGGTCTTCATGCCATGATTTT-------------------------------------------------------------------------------	23
celegans	CTGGAAAGAGTGGCCTTT------------TGTGGTCTTCATGCCATGATTTTAT----CACTCAAACTGATAAAAT---CATAGTTTGG--------AAACCTCGACAGGCTTTTCTTTTCTT--------
cbriggsae	------------------------------TGTGGTCTACA------GTATTTTTTTGAGTATCAATTTCAGAATG------------------------------------------TATCTGTTACCATG
cbrenneri	------------------------------GGTGGTCT-------------------------TAAGGCTAGGGAAC---CAAGGTATTG-------------------GTGTCCTCTTTTTTGAGACCTTT
cjaponica	ATGGAACTGGCGGTGGCTCCCATTCCGAAATGTGGTCTACCCGCCATGGATTTGTTTGACTA-CAATTGCGAACAAC---CTGGATACTACCACATAAAATTGTCCAATGAGGCGTCATGGCTGCTTCCGT-
ppacificus	------------------------------TGTGGTCT---CACACACATTTTCTCGCCCGCTCAAGCTGAGAAAGAGTGTAAAGTATGA--------------------------------AGAGACCGAG
	*****
celegans	..((((((((.(((((.( ((.(((.((((.((.(((((((((( ((.......))))))))) ))).)).))) ).))).))).))))).))))))))..	1.000 -40.40
cbriggsae	.(((((..((( ((((..(((((((.......))))))).) )).)))).))))).	1.000 -14.50
cbrenneri	...((((( (((((..((((((( (((....))) )).))).)).))))))))))...	1.000 -21.10
cjaponica	((((((..(((.(((((.((((((.(((.(((((((.......(((.((..(((((((.... ......)))))))) )))).....)))))))....)))...)))).)).))))).)))..))))))	0.978 -39.50
ppacificus	..(((((( (((((((.(((((((((........)).))))))).))))...)).... .)))))))..	0.982 -20.40

celegans	chromosome:I:13980845:13980941:-1	intergenic ## {SimpF: WRM0637bG05 -1 fosmid,WRM0610cB03 -1 fosmid,WRM0624cC10 -1 fosmid} ## {MIR: cel-mir-1818}
cbriggsae	chromosome:chrX:6785189:6785325:1	Opposite_strand\|Intronic_coding\|NM_153821 ## Same_strand\|Intronic_coding\|NM_125756 ## {Repeats: Mariner7_CB 0 219 -1 class=DNA}
cbrenneri	chromosome:chrUn:97054939:97055075:-1	intergenic
cjaponica	chromosome:chrUn:116767087:116767213:1	Same_strand\|Exonic_coding\|NM_073345
ppacificus	chromosome:chrUn:149498214:149498350:-1	intergenic

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