miR-Intess: cel-mir-1819

cel-mir-1819

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-1819	0.001	no	no	0.41/0.41	22/22/1.00	nd	nd	0	0	0	0	9	2	3arm	1	nd	0.18	1	0	0	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------GGAAUGA--------------------------------------	0	novel
		len	cloning frequencies

cel-miR-1819	--------------------------------------------------------------TGGAATGATTGAGCTTG-ATGGA-----------------------	22
celegans	--AATCAGTGATCAATCAT------GCTCAA-AA---CATTCGACATAACTTAATTTCTTTGTGGAATGATTGAGCTTG-ATGGATCGATGAAA--------------
cremanei	---------------TCAT------ACGGAATTA---CATTCATCGA-----GAATTTTTGATGGAATGA---ATCTTGTATGT------------------------
cjaponica	GTACTTTGTGGATTTCCTTTTCGTCGCCAAGTTATTTCATTTCACGT---GTAAATTCAACGTGGAATGAAATAATTTGGAGATGAAAATGAAATCCGCGAAGTTGGC
ppacificus	AGAATACGT----TCTCTT------------------CATTTCTCACACTCCCTCATCACAGAGGAATGA--------------AGAGACGGATTCT-----------
	* * **** * * *******
celegans	..(((.(((((.((((. (((((( .. (((((.(((..............))).))))).)))))).)) )).))))).)))..	1.000 -27.84
cremanei	.((( (((..(((. (((((((((( (....))))))).))))) ))..)))))).	1.000 -14.80
cjaponica	..((((((((((((((.((((((((.((((((((((((((((((((( .........))))))))))))))))))))).)))))))).))))))))))))))....	1.000 -58.50
ppacificus	(((((.((. (((((( ((((((((................))))))))) ))))))).)))))	1.000 -23.89

celegans	chromosome:X:16207873:16207953:1	intergenic ## {SimpF: WRM0630aF01 1 fosmid,WRM0612dH12 1 fosmid,WRM0631bF11 1 fosmid} ## {MIR: cel-mir-1819}
cremanei	chromosome:chrUn:21211144:21211264:1	Opposite_strand\|Intronic_coding\|NM_180914 ## Same_strand\|Intronic_coding\|NM_001031159
cjaponica	chromosome:chrUn:52211858:52211962:-1	Same_strand\|Intronic_coding\|NM_001022912
ppacificus	chromosome:chrUn:37356861:37356981:1	intergenic