miR-Intess: cel-mir-1821

cel-mir-1821

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-1821	0.004	no	no	0.38/0.38	21/21/1.00	nd	nd	0	0	0	0	23	5	3arm	1	nd	0.19	3	0	0	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------GAGGUCU------------------------------------	0	novel
		len	cloning frequencies

cel-miR-1821	------------------------------------------------------------TGAGGTCTTATAGTTAGGTAG-----------------------	21
celegans	ATATGTAGTTGGTACAAGTTTGCCCAACTTGCAGACTTTTCAATTTTCGGCAAGTGGAATTGAGGTCTTATAGTTAGGTAGACATTTACTACAACTAATATATA
cremanei	----------------------CTTTTTTCTTAGACCCCCC--TTCTCATCGGGGG-----GAGGTCTTATAG-GAGATAG-----------------------
	* * **** * * * * ********** ***
celegans	((((((((((((((...(((((((.((((...(((((..((((((((........)))))))))))))...)))).)))))))...)))..)))))).))))).	1.000 -29.80
cremanei	((.((((((.((((((((( ((......))))) ).)))))...)) )))).))	1.000 -21.40

celegans	chromosome:V:3042529:3042632:-1	intergenic ## {SimpF: WRM0623bG08 -1 fosmid,WRM0614aB12 -1 fosmid,WRM0624bG01 -1 fosmid,WRM0638aC03 -1 fosmid,WRM0622cA02 -1 fosmid,WRM0615aE03 -1 fosmid} ## {MIR: cel-mir-1821}
cremanei	chromosome:chrUn:108725394:108725537:-1	intergenic ## {SimpF: trf}