C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-1824

cel-mir-1824

block1240 (miRBase cel-mir-1824) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-1824	0.004	no	no	0.52/0.52	23/23/1.00	nd	nd	0	0	0	0	12	4	5arm	1	nd	0.13	2	0	0	na	na

block1240 hairpin

		reads	miRBase family seed
seed	-------------GGCAGUG-------------------------------------------------------------------------	0	miR-34
		len	cloning frequencies

cel-miR-1824	------------TGGCAGTGTTTCTCCCCCAACTT----------------------------------------------------------	23
celegans	gttcaccagagtTGGCAGTGTTTCTCCCCCAACTTttgttacagaattgcaaaaatgttggccgtggtgaacacttccgcctctggtttgaag
	*********************************************************************************************
	-------------------------------------------------------------------------------------------------------	Y87G2A.18 Y87G2A.18 Y87G2A.18
celegans	.((((((((((.(((.(((((((..((((((((((((((.........))))))..)))))..).)).))))))).))).)))))))..))).	1.000 -32.80

celegans

chromosome:I:13513943:13514035:1

Opposite_strand|Intronic_coding|Y87G2A.18|Y87G2A.18 ## Y87G2A.18|protein_coding|Y87G2A.18|Y87G2A.18 [Source:RefSeq_peptide;Acc:NP_001021834] ## {SimpF: Y87G2A.D 1 Expression_profile} ## {MIR: cel-mir-1824}

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