cel-mir-1829a
| absolute | CE1 |
| cel-mir-1829a 5arm | 3 |
| cel-mir-1829a 3arm | 4 |
| normalized | CE1 |
| cel-mir-1829a 5arm | 0.002 |
| cel-mir-1829a 3arm | 0.003 |
sblock68 (miRBase cel-mir-1829a) [miRNAknown_lenNOK_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-1829a | 0.011 | no | no | 0.32/0.38 | 19/22/0.50 | 0.0 0.0 | 0.3 0.0 | 3 4 | 0 0 | 1 1 | 0 0 | 0 3 | 2 3 | 5arm 3arm | 1 1 | nd nd | 0.14 0.16 | 1 1 | 7 | 1 | 1 | -1 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------AACCAUU------------------- | 4 | novel |
| seed | -A----GGGGAC--------------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------------CAACCATTGGAATTTCTCT-------- | 19 | 4 | |
| AA----GGGGACTTCTAATTGTTTG-------------------------------------------- | 21 | 2 | |
| AA----GGGGACTTCTAATTGTTTGT------------------------------------------- | 22 | 1 | |
| cel-miR-1829a | ------------------------------------------CAACCATTGGAATTTCTCTATT----- | 22 | - |
| celegans | AA----GGGGACTTCTAATTGTTTGTAAAAAATCGAGTATTACAACCATTGGAATTTCTCTATT----- | ||
| cjaponica | AAAATCGGGGAA----AAATGTTTGAAAAAAAT---ATATTTCAACCAT-----TTTTTACACGACCAC | ||
| ** ***** ** ****** ******* **** ******* *** * * | |||
| +++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | K09A9.5 K09A9.5 gas-1 | ||
| celegans | .( (((((.(((((((.(((.((((...........))))))).))))))).))))))... | 1.000 -14.10 | |
| cjaponica | ....(((..((( (((((.((((((..... ...)))))).))) )))))...))).... | 1.000 -13.20 |
| celegans | chromosome:X:15588233:15588292:-1 | Same_strand|Intronic_coding|K09A9.5|K09A9.5 ## K09A9.5|protein_coding|gas-1|The gas-1 gene encodes a 49 kDa subunit of mitochondrial complex I that is required for oxidative phosphorylation, resistance to volatile anesthetics, fecundity, and normal lifespan. gas-1 is expressed in the nematode neuromuscular system. its subcellular distribution appears to be mitochondrial. drug effects on mutants versus wild-type indicate that gas-1 functions at least partially through presynaptic effects. gas-1 mutants have strongly reduced Complex I-dependent metabolism in mitochondria, while Complex II-dependent metabolism is conversely increased in mutants. gas-1 mitochondria look structurally normal. [Source: WormBase] ## {SimpF: WRM061cB03 -1 fosmid,WRM0611bC07 -1 fosmid,WRM0628aD06 -1 fosmid,WRM0614bD09 -1 fosmid} ## {MIR: cel-mir-1829a} |
| cjaponica | chromosome:chrUn:89502738:89502837:1 | Same_strand|Intronic_coding|NM_005587 |
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