cel-mir-1830
| absolute | CE1 |
| cel-mir-1830 3arm | 1 |
| normalized | CE1 |
| cel-mir-1830 3arm | 0.001 |
sblock11 (miRBase cel-mir-1830) [miRNAknown_multiarm_DicerNOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-1830 | 0.001 | no | no | 0.48/0.50 | 22/23/1.00 | nd 0.0 | nd 0.0 | 0 1 | 0 0 | 0 1 | 0 0 | 0 0 | 8 12 | 5arm 3arm | 1 1 | nd nd | 0.09 0.18 | 1 2 | 1 | 1 | 1 | 0 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------CUAGGAA------------------------------- | 1 | novel |
| seed | -----------------GAGGUUU-------------------------------------------------------------------------------------- | 0 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------------CCTAGGAAATGA-GAAAACTCGGC--------------- | 23 | 1 | |
| cel-miR-1830 | ----------------CGAGGTTTC----ACGTTTTCTAGGC-------------------------------------------------------------------- | 22 | - |
| celegans | ----------------CGAGGTTTC----ACGTTTTCTAGGC---CACGCCGCAAATAG-CCAGCTTGTGGCCTAGGAAATGA-GAAAACTCGGC--------------- | ||
| cbriggsae | ---------------CCTAACTTTTTGAAGAGTTTTCTAGGCCATCGTTCTGAAACTTA-CAACTAGGTGGCCTAGGAAATTG-GAAAACTCGG---------------- | ||
| cjaponica | ----------------CGAGGTTTC----ACGTTTT---------GATGTCGCAACTCGATTGATATACTCGGTATAAAACGCTGAAAACTCG----------------- | ||
| ppacificus | AAAAAAAACCCGCTTTCGAGGTTTC-----CGTTAACAAGGCACGTAATTTACCATTCG-TAAACACACCCGTT---AATCATAGAAGCCTCGATTTCGAAGTTCTTTTT | ||
| * * *** *** * * * ** *** **** | |||
| +++++ +++++++++ +++++++++++++ ++++++++++++++ +++++++++++++++++++++++ +++++++++++ +++++ | B0286.3 B0286.3 B0286.3 | ||
| celegans | ((((.(((( .(((((((((((( (((((.((.....) )..))..))))))))))))))). )))).)))).. | 1.000 -35.80 | |
| cbriggsae | ...............((((((((((((((((....((....... ))....)))))))))))))))). .......... | 0.765 -23.10 | |
| cjaponica | ((((.(((( ((((((( .((..((....((....))......))..)))))))).))))).)))) | 0.510 -14.70 | |
| ppacificus | (((((.(((.((...(((((((((( .((((((..((...((..(((((.....) )))).)).)).))) )))....))))))))))...))..))).))))) | 0.948 -21.60 |
| celegans | chromosome:II:4371833:4371902:-1 | Same_strand|Intronic_coding|B0286.3|B0286.3 ## B0286.3|protein_coding|B0286.3|Probable multifunctional protein ADE2 [Includes: Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) (SAICAR synthetase); Phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21) (AIR carboxylase) (AIRC)]. [Source:UniProtKB/Swiss-Prot;Acc:Q10457] ## {SimpF: WRM0634bG09 -1 fosmid,WRM0638aG07 -1 fosmid} ## {MIR: cel-mir-1830} |
| cbriggsae | chromosome:chrIV_random:205159:205268:1 | Opposite_strand|Intronic_coding|NM_069099 |
| cjaponica | chromosome:chrUn:73591632:73591741:-1 | Opposite_strand|Intronic_coding|NM_059500 |
| ppacificus | chromosome:chrUn:147360305:147360405:-1 | intergenic |
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