miR-Intess: cel-mir-1831

cel-mir-1831

block1747 (miRBase cel-mir-1831) [miRNAknown_RNA_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-1831	0.056	snRNA	no	0.64/0.64	22/22/1.00	nd	nd	0	0	0	0	0	-1	5arm_loop	1	nd	0.32	4	0	0	na	na

		reads	miRBase family seed
seed	---------------------CCUGGCU-------------------------------------------------------	0	novel
		len	cloning frequencies

cel-miR-1831	--------------------ACCTGGCTGGGGGTATCTCGTG-----------------------------------------	22
celegans	--------------------ACCTGGCTGGGGGTATCTCGTGATCATGAAGACGGGATCCCCATGGTGA--------------
cbriggsae	--------------------ACCTGGCTGGGGGTATTCCGTGATCATGAAGACGGAATCCCCATGGCGAGGC-----------
ppacificus	--GCAGCTCCTCATAAACTTACCTGGCTGGGGGTCTCTCGTGATCATGAAGACGGGAACCCTACGGTGAGGCGTGACCATTGC
cjaponica	GCTCGACGACTCATAAACTTACCTGGCTGGGGGTATCTCGCGATCAACAAGGCGGGATCCCCATGGTGAGGCCTGTCTATTGC
cbrenneri	----GGCGACTCATAAACTTACCTGGCTGGGGGTATTTCGCGATCATCAAGGCGGAATCCCCATGGTGAGGCCTGCC------
cremanei	-----GCGACTCATAAACTTACCTGGCTGGGGGTATTCTGTGATCATCAAGGCAGAATCCCCATGGCGAGGCCTTTCCATTGC
	************** * * *** * * * * *** *
	+++++ +++++++++++++++++++++++++++++++++++++++++++++++++ +++++	C15F1.5b C15F1.5 C15F1.5
	+++++ +++++++++++++++++++++++++++++++++++++++++++++++++ +++++	C15F1.5a C15F1.5 C15F1.5
	>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>	C15F1.9 C15F1.9 sup-39
celegans	.....((((((((.(((((((..........))))))))))).))))..	1.000 -17.60
cbriggsae	.(((.((((((((.(((((((..........))))))))))).)))).))).	1.000 -25.80
ppacificus	((((....((((...((((((......(((((.((((((..........)))))))))))..))))))..))))...))))	0.979 -24.80
cjaponica	.......(((.......((((((......((((.(((((((..........)))))))))))..))))))....)))......	0.950 -27.70
cbrenneri	(((..........((((((......((((.(((((((..........)))))))))))..)))))))))....	0.857 -24.60
cremanei	................(((.((((((((.(((((((..........))))))))))).)))).)))............	0.990 -24.20

celegans	chromosome:II:6968442:6968490:-1	Same_strand\|Intronic_coding\|C15F1.5a\|C15F1.5 ## Same_strand\|Exonic_non-coding\|C15F1.9\|C15F1.9 ## C15F1.5\|protein_coding\|C15F1.5\|C15F1.5b [Source:RefSeq_peptide;Acc:NP_001040742] ## C15F1.9\|snRNA\|sup-39\|C15F1.9, snRNA [Source:RefSeq_dna;Acc:NR_002616] ## {SimpF: WRM0638bC12 -1 fosmid,WRM069aH05 -1 fosmid,WRM061cD05 -1 fosmid,WRM0635cG12 -1 fosmid,WRM0618aC01 -1 fosmid,WRM0625bE07 -1 fosmid,C15F1.D -1 Expression_profile,WRM0637cD07 -1 fosmid,CEOP2272 1 Operon} ## {MIR: cel-mir-1831}
cbriggsae	chromosome:chrV:12177554:12177642:1	Opposite_strand\|Intronic_coding\|NM_074155 ## Same_strand\|Intronic_coding\|NM_001113262
ppacificus	chromosome:chrUn:15658487:15658567:-1	Opposite_strand\|Intronic_coding\|NM_028737
cjaponica	chromosome:chrUn:125685895:125685977:1	intergenic
cbrenneri	chromosome:chrUn:68563240:68563312:-1	Same_strand\|Intronic_coding\|NM_063029
cremanei	chromosome:chrUn:132231022:132231099:1	Same_strand\|Intronic_coding\|NM_001047277 ## Opposite_strand\|Intronic_coding\|NM_205265

miR-Intess™

cel-mir-1831

block1747 (miRBase cel-mir-1831) [miRNAknown_RNA_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]