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miR-Intess™


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cel-mir-1832

cel-mir-1832

block2229 (miRBaseNonMapped cel-mir-1832) [miRBaseNonMapped_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBaseNonMapped cel-mir-18320.001noUnknown0.57/0.5721/21/1.00nd
nd
0
0
0
0
8
10
3arm
3
nd
0.10
1
00nana
block2229 hairpin
  readsmiRBase family seed
seed     ---------------------------------------------------------------------------------------------GGGCGGA-----------------------------------     0novel
  lencloning frequencies
   
cel-miR-1832     ------------------------------------------------------------------------------------------T--GGGCGGAGCGAATCGATGAT----------------------     21
celegans     --------------------CCGACCAATCAGCGTTTTC-------------GAACTCCGCCCAATCC----ATCTAATTGGTTGGAAAGT--GGGCGGAGCGAATCGATGATTGGTCGGG--------------      
cremanei     AGATACTGTTCCACAACGTCTCCATCAATCAGATTTCTC-------------GCATTCCGCCCGTTTA-------CAATCGGTTGGGCGGGACGGGCGGAACGAGCT--CCTTTGATATGGAGACCAGCTATCT-      
cbriggsae     ----------------------AGCCAAAAATT-------------------AGGCTCCGCCCATTTT--------------TTTTAAAGT--GGGCGGAGCCTATT-----TTAAAGT----------------      
cjaponica     ----------------------GATTGACAGTTGTTTTTGGTGTTTGCGAACAAGCTCCGCCTACTTTTTGATTTTCAATTTTTTAAATGT--GGGCGGAGCTTGTC--CGATTAGATTAAGGTATTGTGTTTTC      
ppacificus     ----------------------GAGAGAGTGGCGCTCTC-------------GCACCCCTCGTCAGCC--------AATGAGCTTGATAGG--GGGCGGAGACGCCA--CTGTTAG-------------------      
                                 *                             ** *                      *     *   *******            **                           
 -----                    -------------------             ----------------    -------------------  ----------------------------              -----C01F1.6 C01F1.6 C01F1.6
celegans                         (((((((((((.((..(((             (..(((((((((.(((    (.((....)).))))...)  )))))))))))).)).))))))))))).                   1.000 -48.80
cremanei     ((((((((.........((((((((..((((((...(((             (..((((((((((((.       (((....)))....))))))))))))))))..  ..))))))))))))))))).)))))      0.954 -45.30
cbriggsae                           ......(((.(                   ((((((((((((((((              ....)))))  )))))))))))).)     )).....                     1.000 -32.50
cjaponica                           .....(((((...(((((((.....((.(((((((((((((((..(((((...........))))).))  ))))))))))))).  )).....))))))).)))))......     0.995 -37.80
ppacificus                           ..((.((((((((((.(             ((.(((((.((((((.        .....))).))))))  )))))))).)))))  )).))..                        1.000 -39.00

celeganschromosome:II:4284441:4284522:1Opposite_strand|Intronic_coding|C01F1.6|C01F1.6 ## C01F1.6|protein_coding|C01F1.6|C01F1.6 [Source:RefSeq_peptide;Acc:NP_494753] ## {Repeats: CEREP20 49 70 1 class=Unknown} ## {SimpF: C01F1.6 1 Expression_profile,WRM0624aB08 1 fosmid}
cremaneichromosome:chrUn:65023130:65023241:1Opposite_strand|Exonic_coding|NM_067756
cbriggsaechromosome:chrIII:10673025:10673146:1Same_strand|Intronic_coding|NM_170975 ## Opposite_strand|Intronic_coding|NM_075402
cjaponicachromosome:chrUn:110151886:110151994:1Same_strand|Intronic_coding|NM_064565
ppacificuschromosome:chrUn:65000043:65000164:-1intergenic


block4071 (miRBaseNonMapped cel-mir-1832) [miRBaseNonMapped_loopOverlap_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBaseNonMapped cel-mir-18320.001noUNKNOWN0.57/0.5721/21/1.00nd
nd
0
0
0
0
26
-2
3arm_loop
3
nd
0.19
2
00nana
block4071 hairpin
  readsmiRBase family seed
seed     ---------------------------------------------------------GGGCGGA---------------------------------------     0novel
  lencloning frequencies
   
cel-miR-1832     --------------------------------------------------------TGGGCGGAGCGAATCGATGAT--------------------------     21
celegans     TCTCCCTCCAAAATATGAACTCTCCGACCAATCAGCGCAGTTGAACTCTGCTAAAGTGGGCGGAGCGAATCGATGATTGGTCGAAGTTCAAATTTTGGAAGAA      
cbriggsae     -----------------------------CACCACCAGAGGCTCTCACCACAAAAGTGGGCGGAGCCAAGGGATGGCT-------------------------      
cbrenneri     -------------------CTATTTTTTCACTTTTCTCAGC---------CGACAGGGGGCGGAGCGAAGTGAAAAATGG-----------------------      
cjaponica     -------GCAAGATAACAA-----AAAAAACATACCGAAAGAAGTCTCCACGCCTGTGGGCGGAGCTTATGCGGTATTCCCATCCAACAATCCTCTCGC----      
                                         *  *           *    * *********  *        *                               
 -----------------------------------------------------------------------------------------------------------------Y54G2A.2a Y54G2A.2 Y54G2A.2
 -----------------------------------------------------------------------------------------------------------------Y54G2A.2b Y54G2A.2 Y54G2A.2
celegans     (((...((((((((.((((((...((((((((((.((...(((..(((((((......))))))))))..)).)))))))))).)))))).))))))))))).     1.000 -43.70
cbriggsae                                  ..(((((...((((((..((((....))))..))))))...)).)))..                              1.000 -22.80
cbrenneri                        (((.(((((((((((.(((.((         (.......))).))).))))))))))))))                            1.000 -20.40
cjaponica            ((.(((......     .......((((((....(((.((((..(((....))))))))))...))))))................))).))         0.978 -19.85

celeganschromosome:IV:2794097:2794199:-1Opposite_strand|Intronic_coding|Y54G2A.2a|Y54G2A.2 ## Y54G2A.2|protein_coding|Y54G2A.2|Y54G2A.2a [Source:RefSeq_peptide;Acc:NP_001023492] ## {Repeats: Ce000170 88 109 1 class=UNKNOWN}
cbriggsaechromosome:chrII:8445808:8445950:-1Same_strand|Intronic_coding|NM_001047975 ## Opposite_strand|Intronic_coding|NM_001011629
cbrennerichromosome:chrUn:142150396:142150447:1intergenic
cjaponicachromosome:chrUn:85818211:85818297:1Opposite_strand|Boundary_coding|NM_001027993 ## Opposite_strand|Intronic_coding|NM_001002841


sblock32 (miRBase cel-mir-1832) [miRNAknown_shortStem_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBase cel-mir-18320.001nono0.57/0.5721/21/1.00nd
nd
0
0
0
0
0
10
3arm
3
nd
0.15
2
00nana
sblock32 hairpin
  readsmiRBase family seed
seed     -------------------------------------------------------------------------GGGCGGA---------------------------------     0novel
  lencloning frequencies
   
cel-miR-1832     ------------------------------------------------------------------------TGGGCGGAGCGAA--TCGATGAT------------------     21
celegans     ----------------------CAGCGATTCGAACTCCG----CCCACTGCACC-TGATTGGTTGA--CAAGTGGGCGGAGCGAA--TCGATGAT------------------      
cremanei     -----------------GTCTCCATCAATCAGATTTCTCGCATTCCGCCCGTTTACAATCGGTTGGGCGGGACGGGCGGAACGAGCTCCTTTGATATGGAGAC----------      
cbriggsae     ----------------GATTTTGAGCAATTTTGAGCCAAAACTTAGGCTCCAT--CCATTTTCAAT--AAAGTGGGCGGAGCCTATTTTGAAGTCAAGTAAACTGAAATTC--      
cbrenneri     GATGCTTCTGAGAGTGGA-----AAATACTGAAATTTCCAGCCCTCACTGC---------AGCCTG--AAAGGGGGCGGAGCCAG--ATGAAGATTTCCAGACTTACAGGCTC      
cjaponica     ----TTCCTTCGAGTTGCATCATAAAAACATAAGTCTGCA---TTCACTGCGTGATCGTGCGCAAA--TGAGTGGGCGGAGTATCAGTTTTTGATGATGCAACTTGATTGAA-      
ppacificus     ---------GAGACCGTCTCTCCATTCACAATGGTCT------CTCGCTTCTC--TGACCAGCGAG--AGAGCGGGCGGAATGGA-------------GAGACGTTGGTTCTC      
                             *   *                   *                         *******                                       
 +++++                      +++++++++++++++++    +++++++++++ +++++++++++  +++++++++++++++++  ++++++++                  +++++C18D11.4.1 C18D11.4 rsp-8
 +++++                      +++++++++++++++++    +++++++++++ +++++++++++  +++++++++++++++++  ++++++++                  +++++C18D11.4.2 C18D11.4 rsp-8
celegans                           ((.(((((((..(((((    ((((((.(((( .....)).)).  ..)))))))))))))))  ))).))..                       1.000 -36.50
cremanei                      ((((((((..((((((...((((..((((((((((((.(((....)))....))))))))))))))))....))))))))))))))               1.000 -41.10
cbriggsae                     ((.(((.((....(((((..(((((..((((((((..  (((((((....  )))))))..)))))))))))))...)))))....)).))).))       0.859 -29.30
cbrenneri     ...((((.((((..((((     ((...(((....((((.((((((.....         ......  ...)))))))))).)))  .......))))))..)))).))))..     0.961 -26.34
cjaponica         .((..(((((((((((((((((((((((..((((((   ((((.(((((......)))))..  )))))..))))).)))..))))))).)))))))))))))..)).      0.988 -41.00
ppacificus              ((((((((((((((((((....((.(((      ((((((....  .....))))))  ))).))....)))))))             )))))...))).)))     1.000 -43.40

celeganschromosome:III:11829129:11829192:1Same_strand|Intronic_coding|C18D11.4.1|C18D11.4 ## C18D11.4|protein_coding|rsp-8|SR Protein (splicing factor) family member (rsp-8) [Source:RefSeq_peptide;Acc:NP_499533] ## {Repeats: Ce000171 235 256 1 class=___CEMUDR1_DNA/MuDR,Ce000171 226 250 -1 class=___CEMUDR1_DNA/MuDR,Ce000171 185 206 -1 class=___CEMUDR1_DNA/MuDR,Ce000171 191 215 1 class=___CEMUDR1_DNA/MuDR} ## {SimpF: C18D11.4 1 Expression_profile} ## {MIR: cel-mir-1832}
cremaneichromosome:chrUn:65023147:65023232:1Opposite_strand|Exonic_coding|NM_067756
cbriggsaechromosome:chrIII:10672897:10672987:1Same_strand|Intronic_coding|NM_170975 ## Opposite_strand|Intronic_coding|NM_075402
cbrennerichromosome:chrUn:155643736:155643830:-1intergenic
cjaponicachromosome:chrUn:97024069:97024171:-1Same_strand|Intronic_coding|NM_068550 ## Opposite_strand|Intronic_coding|NM_069102
ppacificuschromosome:chrUn:170143661:170143741:-1Opposite_strand|Intronic_coding|NM_000209


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