miR-Intess: cel-mir-1834

cel-mir-1834

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-1834	0.001	no	no	0.39/0.39	23/23/1.00	nd	nd	0	0	0	0	0	7	3arm	1	nd	0.36	6	0	0	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------GAGAUCA-----------------------------	0	miR-80/81/82
		len	cloning frequencies

cel-miR-1834	-------------------------------------------------------AGAGATCAA-------CCATTGAGATCCAA-------	23
celegans	----TGAC------------TCGGTGTGTGATCTCTTACCGTTTTA---TGGATAAGAGATCAA-------CCATTGAGATCCAA-------
cbriggsae	--ATTGGC------------TTGTTATCTGGTCTCATAACTACTTTTCCTGGTTATGAGATCAT-------TTAATGAG-CCCAA-------
cbrenneri	---TTGAC------------CTTATGGTTGATCTCCTACCGACTAG---CGGATAAGAGATCAC---------CATGGGGTACAA-------
ppacificus	GATCTGACCGGACTCTCTCACTTTCGCATGCTCTCTCGCTGTCTCTGA-CCGACGAGAGATCATGGCGAAGTGAGAGAGTCTCGAGCGAGTT
	** * ** * * ******* * * * *
celegans	...( ((((((..((((((((((((((...) ))).)))))))))). .)))))))......	1.000 -25.90
cbriggsae	...((( (..(((..((((((((((((((.......)))))))))))))). .)))..)) ))...	1.000 -29.80
cbrenneri	.(((( (((((((.(((((((.(((((..... ))).)).)))))))) )))))))).)).	1.000 -27.70
ppacificus	((..((..(((((((((((((.((((((((.(((((((..(((...)) )...))))))).)))).))))))))))))))).))..))..))	1.000 -44.70

celegans	chromosome:IV:6660445:6660503:-1	intergenic ## {SimpF: WRM068bB04 -1 fosmid,WRM067cF04 -1 fosmid} ## {MIR: cel-mir-1834}
cbriggsae	chromosome:chrIV:157146:157244:1	Same_strand\|Intronic_coding\|NM_071218 ## Opposite_strand\|Intronic_coding\|NM_001085890
cbrenneri	chromosome:chrUn:96588142:96588240:1	intergenic
ppacificus	chromosome:chrUn:134149351:134149441:-1	intergenic