cel-mir-228
| absolute | CE1 |
| cel-mir-228 5arm | 156 |
| normalized | CE1 |
| cel-mir-228 5arm | 0.109 |
block5470 (miRBase cel-mir-228) [miRNAknown_lenNOK_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-228 | 0.001 | no | no | 0.42/0.53 | 18/23/0.40 | 0.0 0.0 | 1.2 0.0 | 130 1 | 0 0 | 1 1 | 0 0 | 15 19 | 6 6 | 5arm 5arm | 1 1 | nd nd | 0.17 0.21 | 1 1 | 156 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------AUGGCAC--------------------------------------------------------------------------------------- | 152 | miR-228 |
| seed | -----------------------------UGGCACU-------------------------------------------------------------------------------------- | 3 | novel |
| seed | --------------------------------CACUGCA----------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------AATGGCACTGCATGAATTC---------------------------------------------------------------------------- | 19 | 90 | |
| cel-miR-228 | ---------------------------AATGGCACTGCATGAATTCACGG------------------------------------------------------------------------ | 23 | 40 |
| ---------------------------AATGGCACTGCATGAATTCACG------------------------------------------------------------------------- | 22 | 17 | |
| ---------------------------AATGGCACTGCATGAATTCAC-------------------------------------------------------------------------- | 21 | 5 | |
| ----------------------------ATGGCACTGCATGAATTC---------------------------------------------------------------------------- | 18 | 3 | |
| -------------------------------GCACTGCATGAATTCACGG------------------------------------------------------------------------ | 19 | 1 | |
| celegans | ------------CCTTATCCCGTTCGCAATGGCACTGCATGAATTCACGGCTATGCATAACGACAGA------------CCGCGGATCATACGGTACCATAGCGGACGGTGATGAGGTTAAT | ||
| cbriggsae | TACATAAAGGAATCCCACCCTGTTCGCAATGGCACTGCATGAATTCACGG--ATGCAAAGCGACAGA------------CCGCGGATCATGCGGTACCATAGCTGACGGTGGTGAGAT---- | ||
| cjaponica | ------------GCGCCTCCGTTCCGCAATGGCACTGCATGAATTCACGGCT-TGCATCCGGCCACACGGACATTTACGCCGCGGATTGTGCGGTACCATAGCGGACGGACGGGCGGCGC-- | ||
| cbrenneri | ---------------------------AATGGCACTGCATGAATTCACGG--ATGCATTGCGACAGA------------CCGCGGATCATGCGGTACCATA--------------------- | ||
| cremanei | --------AGAATCCTATCTTGTTCGCAATGGCACTGCATGAATTCACGG--ATGCATTGCGACAGA------------CCGCGGATCATGCGGTACCATAGCGGACAGTGGTG-------- | ||
| *********************** **** * ** * ******** * ********** | |||
| celegans | (((((((((((((((.((((.((((.((((.(((.(((((...(.....)..)). ))).))))))).)))).)))).)))))))).)))))))..... | 1.000 -44.20 | |
| cbriggsae | ...........(((.(((((((((.((.((((.((((((((.((((.((( .((........)).. ))).)))))))))))).)))).)).))))).)))).))) | 0.998 -42.50 | |
| cjaponica | (((((((((((((((.((((.(((((((.(((((.((((. ....((((......)))).......)))).)))))))))))).)))).)))))...))))).))))) | 1.000 -56.60 | |
| cbrenneri | .((((.((((((((.((((.((( .((........)).. ))).)))))))))))).)))). | 0.997 -24.70 | |
| cremanei | .......((((((((((((.((((.((((((((.((((.((( .((........)).. ))).)))))))))))).)))).)))))))).)))) | 0.985 -38.40 |
| celegans | chromosome:IV:5562012:5562109:1 | intergenic ## {SimpF: WRM0630cD06 1 fosmid,WRM0628dC05 1 fosmid,WRM069aH08 1 fosmid,WRM0610cC12 1 fosmid,T12E12.5 1 Expression_profile,WRM063bD03 1 fosmid,WRM0625cE08 1 fosmid,WRM0626cB03 1 fosmid} ## {MIR: cel-mir-228} |
| cbriggsae | chromosome:chrIV:8555778:8555881:-1 | Same_strand|Intronic_coding|NM_066961 ## {MIR: cbr-mir-228} |
| cjaponica | chromosome:chrUn:34732342:34732448:1 | intergenic |
| cbrenneri | chromosome:chrUn:70281145:70281282:-1 | intergenic |
| cremanei | chromosome:chrUn:60549600:60549691:-1 | intergenic |
©2008 InteRNA Genomics B.V.