cel-mir-230
| absolute | CE1 |
| cel-mir-230 5arm | 4 |
| cel-mir-230 3arm | 182 |
| normalized | CE1 |
| cel-mir-230 5arm | 0.003 |
| cel-mir-230 3arm | 0.127 |
sblock73 (miRBase cel-mir-230) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-230 | 0.001 | no | no | 0.36/0.53 | 18/23/0.89 | 0.2 0.0 | 1.0 0.9 | 4 161 | 0 0 | 1 1 | 0 0 | 16 16 | 4 6 | 5arm 3arm | 1 1 | nd nd | 0.05 0.09 | 1 1 | 186 | 1 | 2 | 1 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------UAUUAGU-------------------------------------------- | 167 | miR-230 |
| seed | -----------------------------------------------------------------------------AUUAGUU------------------------------------------- | 13 | novel |
| seed | --------------------------------CUUGGUC---------------------------------------------------------------------------------------- | 3 | novel |
| seed | --------------------------------------------------------------------------------AGUUGUG---------------------------------------- | 2 | novel |
| seed | ---------------------------------UUGGUCG--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------------------------------------------------------GTATTAGTTGTGCGACCAGGAG------------------------------ | 22 | 90 | |
| ---------------------------------------------------------------------------GTATTAGTTGTGCGACCAGG-------------------------------- | 20 | 71 | |
| ----------------------------------------------------------------------------TATTAGTTGTGCGACCAGG-------------------------------- | 19 | 12 | |
| ---------------------------------------------------------------------------GTATTAGTTGTGCGACCA---------------------------------- | 18 | 5 | |
| -------------------------------ACTTGGTCGGCGATTTAATATT-------------------------------------------------------------------------- | 22 | 2 | |
| -------------------------------------------------------------------------------TAGTTGTGCGACCAGGAGA----------------------------- | 19 | 2 | |
| --------------------------------CTTGGTCGGCGATTTAATATTA------------------------------------------------------------------------- | 22 | 1 | |
| -------------------------------ACTTGGTCGGCGATTTAAT----------------------------------------------------------------------------- | 19 | 1 | |
| ----------------------------------------------------------------------------TATTAGTTGTGCGACCAGGAG------------------------------ | 21 | 1 | |
| cel-miR-230 | ---------------------------------------------------------------------------GTATTAGTTGTGCGACCAGGAGA----------------------------- | 23 | 1 |
| celegans | ----------TTGATGTAA-----TGCCGTCACTTGGTCGGCGATTTAATATTATCAGAACATAGGAAATTGTTAGTATTAGTTGTGCGACCAGGAGACGGTATTCGCATATT-------------- | ||
| cbriggsae | AGTTTCTCATATAATAAAATGCCTTACCGATACTTGGTCGACAATTTAATAGTATCT--GATTAATTGATGGATAGTATTAGTTGTGCGACCAGGAAATGGTATGAGCATTTCAATTTGAAGAAATT | ||
| cjaponica | ----------ACAATCAAG-----TACCGTCACTTGGTCGACGGCTCAATATTATCA-CACTTTGTTAATTGTTAGTATTAGTTGTGCGACCAGGAGACGGTA------------------------ | ||
| cbrenneri | ------------AATGTGG-----TACCGATACCTGGTCAACAGCATAATATTATCA--AATATTGAGAGTGATAGTATTAGTTGTGTGACCAGGAGACGGT---TAAACATT-------------- | ||
| cremanei | TCTTTCCCGCAAGATGTTG-----TACCGATACTTGGTCGACAATCTAATATTATCG--GTTCTGCCAGAAGATAGTATTAGTTGTGCGACCAGGAGACGGTATTTA-ACATC-------------- | ||
| ** * *** ** ***** * **** **** * ************** ******** * *** | |||
| celegans | ...(((((( (((((((.((((((((((((((.(((((((.(((...........))).))))))))))))).)))))))).))))))))).))))... | 1.000 -37.90 | |
| cbriggsae | (((((((((.......((((((..(((((...((((((((((((.((((((.((((( .(((....)))))))).)))))))))).))))))))...)))))...)))))).....))).)))))) | 0.998 -39.20 | |
| cjaponica | ......... (((((((.((((((((((((((.(((((((..( ((.((....)).)))))))))))))))).)))))))).))))))) | 0.994 -34.50 | |
| cbrenneri | (((((.. .((((...(((((((((((((.((((((((((( ...........)))))))))))))))).))))))))...)))) ...))))) | 1.000 -37.60 | |
| cremanei | ............((((((( (((((...((((((((((((.(((((((((((( (.....))....))))))))))))))).))))))))...))))))..) ))))) | 0.994 -40.80 |
| celegans | chromosome:X:5803852:5803949:1 | intergenic ## {SimpF: WRM064cC12 1 fosmid,WRM0626cF01 1 fosmid,WRM0618aE12 1 fosmid,WRM067cH03 1 fosmid,WRM063cG10 1 fosmid,WRM065bC09 1 fosmid,WRM0633bF12 1 fosmid,WRM0637bH01 1 fosmid,WRM0627bH09 1 fosmid,WRM068aC04 1 fosmid,WRM0640cA03 1 fosmid,WRM0634dA04 1 fosmid} ## {MIR: cel-mir-230} |
| cbriggsae | chromosome:chrX:10968443:10968567:1 | Opposite_strand|Intronic_coding|NM_027552 ## Same_strand|Intronic_coding|NM_011438 ## {MIR: cbr-mir-230} |
| cjaponica | chromosome:chrUn:38524806:38524892:-1 | intergenic |
| cbrenneri | chromosome:chrUn:4060010:4060100:1 | intergenic |
| cremanei | chromosome:chrUn:2006531:2006635:-1 | intergenic |
©2008 InteRNA Genomics B.V.