cel-mir-232
| absolute | CE1 |
| cel-mir-232 5arm | 2 |
| cel-mir-232 3arm | 37 |
| normalized | CE1 |
| cel-mir-232 5arm | 0.001 |
| cel-mir-232 3arm | 0.026 |
sblock38 (miRBase cel-mir-232) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-232 | 0.001 | no | no | 0.39/0.41 | 20/23/1.00 | 0.0 0.0 | 1.5 0.0 | 2 36 | 0 0 | 1 1 | 0 0 | 18 16 | 8 7 | 5arm 3arm | 1 1 | nd nd | 0.17 0.23 | 2 2 | 39 | 1 | 2 | 1 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------------AAAUGCA------------------------------------------------ | 37 | miR-232 |
| seed | ---------------------------------------------CUGCAGU------------------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------------------------------------------------------------------TAAATGCATCTTAACTGCGGTG---------------------------------- | 22 | 36 | |
| --------------------------------------------CCTGCAGTTTCGATGATTTTATC---------------------------------------------------------------------------- | 23 | 1 | |
| cel-miR-232 | ---------------------------------------------------------------------------------------TAAATGCATCTTAACTGCGGTGA--------------------------------- | 23 | 1 |
| --------------------------------------------CCTGCAGTTTCGATGATTTT------------------------------------------------------------------------------- | 20 | 1 | |
| celegans | -----------AAGTTCAATTTT---------------TGGATCCCTGCAGTTTCGATGATTTTATCCTTAATT-CTGAAGATGTGATAAATGCATCTTAACTGCGGTGATCTAGATC--ATGAACA---------------- | ||
| cbriggsae | -------------TTCAAGATTT---------------CGGATCTCCGTAGTTTTGACCATTTTATCCAAC----CTAATAATGTGATAAATGCATCTTAACTGCGGTGATCTGGATTTTGTGAA------------------ | ||
| cjaponica | -----------TGGTAAGTTTCTGGGTCCTCACGAGCGTGGATCTCCGTAGTTTCGATCGTTTTATCCAGCGCCACAAACCGTGCGATAAATGCATCTTAACTGCGGTGATCTGCAATTCTGGGACACGCTTTTTTCA----- | ||
| cbrenneri | -------------GTCCTTTTTT---------------CGGATCCCCGTAGTTTCGATCATTTTATCCTGCCCAACTCAAAAAGTGATAAATGCATCTTAACTGCGGTGATCTGATTTCAATGGACACGTTTTC--------- | ||
| cremanei | GAGGTAAGTTGAAGTCTGATTGT---------------CGGATCTCCGTAGTTTCGATCATTTTATCCTATCT--CCAACAAAGCGATAAATGCATCTTAACTGCGGTGATCTGAATTC-TTGGACACTTTTTTCTTTATTTC | ||
| * * * ***** * * ***** ** ******** * * * **************************** * * | |||
| celegans | ..(((((...(( ((((((.((((((((..((((..(((((((.....( (....)).).))))))..))))..)))))))).)))))))).. .))))). | 1.000 -35.60 | |
| cbriggsae | ..(((((.(( ((((((.((((((((..((....((((((((.. .......)).))))))....))..)))))))).))))))))))))).... | 1.000 -31.00 | |
| cjaponica | .((.((((......((((.((.((..(((((((.((((((((..(((((.((((((..((((........)))))))))))).)))..)))))))).)))))))..)).))))))..))))...)). | 0.976 -41.30 | |
| cbrenneri | ((((.....( ((((((.((((((((..(((((.((((((((.............)).)))))))).)))..)))))))).))))))).......))))........ | 1.000 -35.42 | |
| cremanei | ((((((((..(((((((((...( ((((((.((((((((..(((((.((((((((.... .......)).)))))))).)))..)))))))).))))))).... ))))))....)))..)))))))) | 1.000 -37.80 |
| celegans | chromosome:IV:10994139:10994236:-1 | intergenic ## {SimpF: WRM0641dF09 -1 fosmid,WRM0637cH04 -1 fosmid} ## {MIR: cel-mir-232} |
| cbriggsae | chromosome:chrIV:5768761:5768853:1 | Same_strand|Intronic_coding|NM_001106790 ## Opposite_strand|Intronic_coding|NM_001128722 ## {MIR: cbr-mir-232-1} |
| cjaponica | chromosome:chrUn:41745062:41745188:-1 | Opposite_strand|Intronic_coding|NM_172827 |
| cbrenneri | chromosome:chrUn:102760956:102761061:1 | intergenic |
| cremanei | chromosome:chrUn:56798774:56798898:-1 | Opposite_strand|Intronic_coding|NM_069625 |
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