C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-234

cel-mir-234

Cloning frequencies
absolute	CE1
cel-mir-234 3arm	25
normalized	CE1
cel-mir-234 3arm	0.017

cel-mir-234 relative cloning frequencies

block2076 (miRBase cel-mir-234) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-234	0.003	no	no	0.38/0.40	20/21/1.00	0.0	0.0	23	0	1	0	15	9	3arm	1	nd	0.14	2	25	1	na	na

block2076 hairpin

		reads	miRBase family seed
seed	------------------------------------------------------------------------------UAUUGCU---------------------------------------------	25	miR-234
		len	cloning frequencies
			CE1
cel-miR-234	-----------------------------------------------------------------------------TTATTGCTCGAGAATACCCTT--------------------------------	21	23
	-----------------------------------------------------------------------------TTATTGCTCGAGAATACCCT---------------------------------	20	2
celegans	----------------CAAAAAATGATCAAACGGTATTCCAGAGTTGATAATAAAAATG-CGTCAGTCCGCAATCTATTATTGCTCGAGAATACCCTTTGAC------TACTATGTGTA-----------
cbriggsae	-----------------------------AACGGTATTCCTGAGTGAATAATAAAAATG-------AGTCCATTCTATTATTGCTCGAGAATACCCTT--------------------------------
cjaponica	-----------AAAAACACACCACGTTCGATAGGTGTTCCAGAGTTGATAATAATCGTGCCAT--GTGCACATT-TATTATTGCTTGAGAATACCCCTCGGCAGATTGTGTTCTGTTTTT----------
cbrenneri	------GAATTCATGCAACAATCAGCTCAAACGGTATTCTTTGGTTAATAATAAGGATGGCATCACGACTCATTATATTATTGCTCAAGAATACCCTTTGACAAATGTCGCGTGACATC-----------
cremanei	GATGAATGGTAAGTGGTGAACCAAGCTCAAACGGTATTCGACGGTGAATAATAAAAATGACATTGCGACTCATTCTATTATTGCTCGAGAATACCCTTTGACACGGTTCACCTTTTTTTTGGTATTTGTC
	* * * *** ** * ******** ******* *
celegans	..........(((((.(((((((..((((.(((((((....(( ((......))))...)))))))))))..))))))).))))). ...........	1.000 -25.80
cbriggsae	...(((((((.(((((.(((((((..(((( ....)))).)))))))))))).)))))))...	1.000 -19.60
cjaponica	(((((((...((((.((((..(((((((..(((.(((((((((..((((... ..))))..) )))))))))))..)))))))..)))).....))))...)))))))	0.980 -32.00
cbrenneri	....((((((.(((......(((((.(((((((((.((.((((((((..(((((.........))))).)))))))))).))))))))).)))))....))).))))))....	0.999 -32.00
cremanei	((..((((.((((.((((((((....(((((.(((((((..((((.(((((((..(((((.........))))).))))))))).)).))))))).)))))...)))))))).....)))).))))..))	1.000 -40.40

celegans	chromosome:II:14466166:14466261:-1	intergenic ## {SimpF: WRM0610dF04 -1 fosmid,WRM0628cE10 -1 fosmid,WRM0621aF07 -1 fosmid} ## {MIR: cel-mir-234}
cbriggsae	chromosome:chrII:319362:319497:1	Same_strand\|Intronic_coding\|NM_001111076 ## Opposite_strand\|Intronic_coding\|NM_012560 ## {MIR: cbr-mir-234}
cjaponica	chromosome:chrUn:86889440:86889545:-1	intergenic
cbrenneri	chromosome:chrUn:129395905:129396017:1	intergenic
cremanei	chromosome:chrUn:46416256:46416385:1	intergenic

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