cel-mir-235
| absolute | CE1 |
| cel-mir-235 5arm | 1 |
| cel-mir-235 3arm | 82 |
| normalized | CE1 |
| cel-mir-235 5arm | 0.001 |
| cel-mir-235 3arm | 0.057 |
sblock3 (miRBase cel-mir-235) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-235 | 0.003 | no | no | 0.43/0.62 | 21/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 80 | 0 0 | 1 1 | 0 0 | 18 16 | 4 10 | 5arm 3arm | 1 1 | nd nd | 0.30 0.24 | 2 2 | 83 | 1 | 2 | 1 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------------AUUGCAC----------------------------------------------------- | 80 | miR-235 |
| seed | --------------------------------------------------------------------------------------UAUUGCA------------------------------------------------------ | 1 | novel |
| seed | ----------------------------------------------------------------------------------------UUGCACU---------------------------------------------------- | 1 | novel |
| seed | ----------------------------------------GGCCUUG---------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------------------------------------------------------------------------TATTGCACTCT-CCCCGGCCTG--------------------------------------- | 21 | 80 | |
| ---------------------------------------------------------------------------------------ATTGCACTCT-CCCCGGCCTGA-------------------------------------- | 21 | 1 | |
| -------------------------------------------------------------------------------------ATATTGCACTCT-CCCCGGCCTG--------------------------------------- | 22 | 1 | |
| ---------------------------------------AGGCCTTGGCTGATTGCA-AAATT------------------------------------------------------------------------------------ | 23 | 1 | |
| cel-miR-235 | --------------------------------------------------------------------------------------TATTGCACTCT-CCCCGGCCTGA-------------------------------------- | 22 | - |
| celegans | ---------------------TCCGAAGATATCAGGATCAGGCCTTGGCTGATTGCA-AAATTGT-TCACCGT---GAAAATTAAATATTGCACTCT-CCCCGGCCTGATCT-----GAGAGTAAGGCG------------------ | ||
| cbriggsae | TACTATTCCCTATTCTAAAAATCTGAAATCTT--GGATCAGGCTCTGGTCATGTGCATATATTGC-GCTATAT------ATGCTAATATTGCACTTGACCATGGCCTCGTCT----AGAAAGTAAGACAGTTTCAGAAAGGTAAGTA | ||
| cjaponica | -----ACGCATAAAAAAGAAAGAAAGAAAGACAAGGATCAGGTCTTGGCCGGTTGCATATATTGCGTCGACA----GAAATGCTAATATTGCACTCG-CCCCGGCCTGATCT-------------GGCACTTTTTTTGCGT------ | ||
| cbrenneri | ---------GAAATCTGAAAATTTCGAAAAAAAAAGATCAGGTCCTGGCTGACTGCATATATTGC-TCAACGTTAAAGAATGCTAATATTGCACTCG-CCCCGGCCTGATCGATAAAGAAATTAGTAAGATTTT------------- | ||
| cremanei | --------------------------------------CAGGCCTTGGCCGAATGCATATATTGC-TCAGTT----GAATTGCTAATATTGCACTCG-CCCCGGCCTG--------------------------------------- | ||
| **** *** **** * **** * *********** ** ***** | |||
| celegans | .((.......((((.((((((((..((..((.(((( (.(((.( ((..... ))).....))).))))).)). .)).)))))))))) ))......)).. | 1.000 -31.52 | |
| cbriggsae | ((((....(((.((((.(((.(((......(( ((((.(((((.((((((.(((((.((((((. ((..... ..))))))))))))).)))))).))))).)))) ))......)))...))).)))))))..)))) | 0.962 -44.00 | |
| cjaponica | (((((.............(((((((....((((((((((..(((.((.((((.(((((((((..... ...)))).))))))))))).) ))..)))))))))) ....)))))))))))) | 1.000 -40.61 | |
| cbrenneri | (((((((...((((((..........(((((((((..(((.((.((((.((((((( ...............)).))))))))).))) ))..)))))))))......))))))....))))))) | 0.988 -36.35 | |
| cremanei | ((((((..((.(((.((((.((((((( ...... .....)).))))))))).))) ))..)))))) | 0.999 -25.00 |
| celegans | chromosome:I:6162293:6162389:-1 | intergenic ## {SimpF: WRM0611dF11 -1 fosmid,WRM065bH05 -1 fosmid,WRM0626aC03 -1 fosmid,WRM0621bH03 -1 fosmid} ## {MIR: cel-mir-235} |
| cbriggsae | chromosome:chrI:8823476:8823609:-1 | Same_strand|Intronic_coding|NM_001032899 ## Opposite_strand|Intronic_coding|NM_199320 |
| cjaponica | chromosome:chrUn:154386872:154386989:-1 | Same_strand|Intronic_coding|NM_001066065 |
| cbrenneri | chromosome:chrUn:84663076:84663198:1 | intergenic |
| cremanei | chromosome:chrUn:122165177:122165313:1 | intergenic |
©2008 InteRNA Genomics B.V.