miR-Intess: cel-mir-236

cel-mir-236

Cloning frequencies
absolute	CE1
cel-mir-236 3arm	175
normalized	CE1
cel-mir-236 3arm	0.122

block1752 (miRBase cel-mir-236) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-236	0.001	no	no	0.32/0.50	18/24/0.95	0.0	0.0	146	0	1	0	15	5	3arm	1	nd	0.13	1	175	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------------------AAUACUG-------------------------------------------------	172	miR-236
seed	--------------------------------------------------------------------------------------------------CUGUCAG---------------------------------------------	2	novel
seed	-----------------------------------------------------------------------------------------------AUACUGU------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
cel-miR-236	---------------------------------------------------------------------------------------------TAATACTGTCAGGTAATGACGCT----------------------------------	23	146
	---------------------------------------------------------------------------------------------TAATACTGTCAGGTAATGACGC-----------------------------------	22	17
	---------------------------------------------------------------------------------------------TAATACTGTCAGGTAATG---------------------------------------	18	6
	----------------------------------------------------------------------------------------------AATACTGTCAGGTAATGACGCT----------------------------------	22	1
	---------------------------------------------------------------------------------------------TAATACTGTCAGGTAATGACG------------------------------------	21	1
	---------------------------------------------------------------------------------------------TAATACTGTCAGGTAATGACGCTG---------------------------------	24	1
	-------------------------------------------------------------------------------------------------ACTGTCAGGTAATGACGCT----------------------------------	19	1
	---------------------------------------------------------------------------------------------TAATACTGTCAGGTAATGA--------------------------------------	19	1
	-------------------------------------------------------------------------------------------------ACTGTCAGGTAATGACGC-----------------------------------	18	1
celegans	--------------TCGGTGACCGAT----------GTCCAGCGTCTTACC--------TGTTCAATATTTAGACTGACTAT-CAAAGAGATCTAATACTGTCAGGTAATGACGCTGGATTGTCATGTCAT-------------------
cbriggsae	----------------------------------------AGCGTCTTACC--------TGTTCAATATTTAGACTGACCAAACCCATAGCTCTAATACTGTCAGGTAATGACGCT----------------------------------
cjaponica	--------------TTGATTAATAAT---------------------------------TGAAGAATTTTC------ACTACATAAGAAGTGAAAATACTGACA-------------------ATTATAGTTTT----------------
cbrenneri	TACTGTCCTATTCTGAGGTGACCGAT----------GTCCAGCGTCTTACC--------TGTTCAATATTTAGACTAAC-ACATCAAGAGATCTAATACTGTCAGGTAATGACGCTGGGTAATAGTGTCGCTTATTTGAAATCAACGGTA
ppacificus	-----------------GTGAAGAATCAACAAGAGGGACAGGCATGATACCGTTAACTGGGAACGATATTTTATAATATTTTATCATAATATACAATACTGGCACCCATTTACGTTTGATGAAATTGTACTTTTTTGGAATTTGGGC---
cremanei	--CTGTCCTATTCTTTGGTGACCGAT----------GTCCAGCGTCTTACC--------TGTTCAATATTTAGACTGATTAGCTCATGAGATCTAATACTGTCAGGTAATGACGCTGGATTATCTTGTCATTTATGATAAGCAACACAG-
	* * * *****
celegans	...(((((.((( ((((((((((((((( ((..((.((((.(((((...... .....)).))))))).)).))))))).))))))))).))))..)))))	1.000 -36.50
cbriggsae	((((((((((( ((..((.((.((((((((..........))).))))))).)).))))))).))))))	1.000 -21.50
cjaponica	..((((.((((( ((.((.(((((( (((........))))))))).))..)) )))))))))..	1.000 -14.70
cbrenneri	((((((....(((..(((((((..(( ..((((((((((((( ((..((.((.(((((((... ........)).))))))).)).))))))).))))))))...))...)))))))....)))....))))))	0.995 -42.00
ppacificus	.....((((...((((((((((((.(((.....((.(((.((((..((.((((.((((.(((......))).)))).)))).))...)))).)))))....)))...)))).))))))))..))))....	0.847 -21.10
cremanei	((((.((..((...((((((.((( ((((((((((((((( ((..((.((.(((((((.((......)).)).))))))).)).))))))).)))))))))).)))..))))))...))..))....))))	0.939 -43.10

celegans	chromosome:II:7030119:7030216:-1	intergenic ## {SimpF: WRM0622cH07 -1 fosmid,WRM068aG05 -1 fosmid,WRM0619aC05 -1 fosmid} ## {MIR: cel-mir-236}
cbriggsae	chromosome:chrII:5133868:5133935:-1	Opposite_strand\|Intronic_coding\|NM_004845 ## Same_strand\|Intronic_coding\|NM_001047951 ## {MIR: cbr-mir-236}
cjaponica	chromosome:chrUn:86501543:86501680:-1	Opposite_strand\|Intronic_coding\|NM_024331 ## Same_strand\|Intronic_coding\|NM_000215
cbrenneri	chromosome:chrUn:68604096:68604226:-1	Same_strand\|Intronic_coding\|NM_023651
ppacificus	chromosome:chrUn:139137016:139137145:1	Same_strand\|Intronic_coding\|NM_171584 ## {Repeats: AT_rich 1 28 1 class=Low_complexity}
cremanei	chromosome:chrUn:132170869:132170997:1	Opposite_strand\|Intronic_coding\|NM_205265

miR-Intess™

cel-mir-236

block1752 (miRBase cel-mir-236) [miRNAknown_cloningHIGH_randfoldOK]