miR-Intess: cel-mir-243

cel-mir-243

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-243	0.001	no	no	0.65/0.65	23/23/1.00	nd	nd	0	0	0	0	15	5	3arm	1	nd	0.04	1	0	0	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------GGUACGA--------------------------------	0	novel
		len	cloning frequencies

cel-miR-243	---------------------------------------------------------------------------CGGTACGATCGCG--GCGGGATATC---------------	23
celegans	TGTTCACGCATAAGCCTGATATCTCGGTGCGATCGTACCGTATCGCT--------------CACACT-TAGATTACGGTACGATCGCG--GCGGGATATCAGGTACGTGATTGGA
cbriggsae	-------------GCCAGAAT-----CCGCGTTGGCACGTCGTCGAG----------ATTCTACAATAAGGGTCTCGGTACGATCGGAAGGCGCGGCG----------AATGGAC
cbrenneri	--------------------------AGGCGATGGGTCCTAGTCGCCTTGTCAGTCGATCCATCGAT-TGGCTTGAGGTACGACTGGA--GCTTCACC----------A------
ppacificus	--------------CTCCGTA-----ATCCGATCGTACCCAGCCGCG-------------CCCTGGT-CGGCT--GGGTACGATCGGA--TTACGGTA----------G------
	** * * * ** * * * ******* *
	++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++ ++++++++++++++++++++++++++++++	R08C7.12.1 R08C7.12 R08C7.12
celegans	...(((((.....(((((((((((((.(((((((((((((((((... ...... ..)).))))))))))))))) .))))))))))))).))))).....	1.000 -55.70
cbriggsae	.(((.... (((((((....(((((((((( (((((......)))))))))..)))).))...))))))).. ..)))..	1.000 -32.50
cbrenneri	.((.((.((.(((.((((((((((((((((((....))))) ))))..))))..)))))))) .)))).)) .	1.000 -31.60
ppacificus	..((((( (((((((((((((((((((.( (....)) ))))) ))))))))))))) )))))).. .	1.000 -51.40

celegans	chromosome:IV:4450772:4450869:1	Same_strand\|Intronic_non-coding\|R08C7.12.1\|R08C7.12 ## Same_strand\|Boundary_non-coding\|R08C7.12.2\|R08C7.12 ## R08C7.12\|protein_coding\|R08C7.12\|Uncharacterized protein R08C7.12. [Source:UniProtKB/Swiss-Prot;Acc:Q9GQ60] ## {SimpF: WRM0639cG05 1 fosmid,WRM0637aA04 1 fosmid} ## {MIR: cel-mir-243}
cbriggsae	chromosome:chrI:10235666:10235742:1	Opposite_strand\|Intronic_coding\|NM_212577 ## Same_strand\|Intronic_coding\|NM_067049 ## Same_strand\|Boundary_coding\|NM_060599
cbrenneri	chromosome:chrUn:179683520:179683657:-1	intergenic
ppacificus	chromosome:chrUn:174279691:174279828:-1	intergenic