cel-mir-244
| absolute | CE1 |
| cel-mir-244 5arm | 12 |
| cel-mir-244 3arm | 18 |
| normalized | CE1 |
| cel-mir-244 5arm | 0.008 |
| cel-mir-244 3arm | 0.013 |
sblock2 (miRBase cel-mir-244) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-244 | 0.001 | no | no | 0.33/0.40 | 20/24/1.00 | 0.0 0.0 | 1.4 0.0 | 11 17 | 0 0 | 1 1 | 0 0 | 15 22 | 3 6 | 5arm 3arm | 1 1 | nd nd | 0.21 0.25 | 3 2 | 30 | 1 | 2 | 0 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------ACUGCUU----------------------------------------- | 18 | novel |
| seed | ------------------------------------CUUUGGU---------------------------------------------------------------------------------------- | 12 | miR-244 |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------------TACTGCTT----TTCAGCTAAAGG------------------------- | 20 | 17 | |
| cel-miR-244 | -----------------------------------TCTTTGGTTGTACA-AAGTGGTATG----------------------------------------------------------------------- | 24 | 6 |
| -----------------------------------TCTTTGGTTGTACA-AAGTGGT-------------------------------------------------------------------------- | 21 | 5 | |
| ----------------------------------------------------------------------------------TACTGCTT----TTCAGCTAAAGGAATT--------------------- | 24 | 1 | |
| -----------------------------------TCTTTGGTTGTACA-AAGTGG--------------------------------------------------------------------------- | 20 | 1 | |
| celegans | ---------------CTCCATATCTCAATC-----TCTTTGGTTGTACA-AAGTGGTATG----GCTCATCGAATAAGCACATACTGCTT----TTCAGCTAAAGGAATTGAGATTTTGTAGGCTTTT--- | ||
| cremanei | -----------------------------------TCTTTGGTGCTAGAAAAGTAATAAC------------TTCATGTGAAGAATTCCT----TCTCACCAAAGG------------------------- | ||
| cbriggsae | --------------CCCAAATTTCTCGATT-----TCTTTGGTTGTACA-AAGTGGTATGGCTCTCTT---------GCTCATACCGCTT----TACAGCTAAAGGAATCGATTGATTTTGG--------- | ||
| cjaponica | ----------------GCCGATTCTCGATC-----TCTTTGGTTGTACA-AAGTGGTATGAGTACTATAAGAGGCA-ATGCATACCGCTT----TTCAACTGAAGGAATCGAGTGTTTGGC---------- | ||
| cbrenneri | ATTCTGATTTTTCCGCCCCATTTCTCGATC-----TCTTTGGTTGTACA-AAGTGGTATGGCAATTTCATTAAAAATGCTCATACCGCTT----TTCAGCTGAAGGAATCGTGTTTGTGGGTAATTAGAAT | ||
| ppacificus | -------------------GATCTTTGACCTTTAATCTTTGGTTTTTGATCTTTGGTGTCTGATTTGTCTGGAATACGATCGTGATGCCGAAGATTGAACCGGAG-------------------------- | ||
| ******** * * * * * * * ** | |||
| celegans | ((.((.((((((((. .(((((((((...( (((..((((( (((.........))).)))))..))) ).)))))))))..))))))))..)).))...... | 1.000 -38.20 | |
| cremanei | .((((((((..(((..((.(((..( (((....)))).))).)) ))))))))))). | 0.705 -13.80 | |
| cbriggsae | ((.(((((..(((((( ((((((((((((.. ((((((((((((...... )).)))))))))) ))))))))))))))))))..))))).)) | 1.000 -45.10 | |
| cjaponica | (((((..((((((. .(((..((((...( ((((((((((....((.....))... ...)))))))))) ).))))..)))..))))))...))))) | 1.000 -41.90 | |
| cbrenneri | (((((((((.....((((((.....((((. .(((..((((...( (((((((((((((.(((.....))).))).)))))))))) ).))))..)))..))))....)).))))))))))))) | 1.000 -47.30 | |
| ppacificus | .................(((((((((..((((((((((((((((.((((.......))))))).)))))))))))))))))))))) | 0.961 -27.50 |
| celegans | chromosome:I:4684317:4684415:-1 | intergenic ## {SimpF: WRM0635aD01 -1 fosmid,WRM065dB07 -1 fosmid} ## {MIR: cel-mir-244} |
| cremanei | chromosome:chrUn:54114870:54115008:-1 | Same_strand|Intronic_coding|NM_071346 ## Opposite_strand|Intronic_coding|NM_070932 |
| cbriggsae | chromosome:chrI:2688433:2688521:1 | Opposite_strand|Intronic_coding|NM_080376 ## Same_strand|Intronic_coding|NM_131292 ## {MIR: cbr-mir-244} |
| cjaponica | chromosome:chrUn:44620221:44620314:-1 | Same_strand|Intronic_coding|NM_143141 |
| cbrenneri | chromosome:chrUn:31651738:31651858:1 | Same_strand|Intronic_coding|NM_203889 |
| ppacificus | chromosome:chrUn:141119355:141119440:-1 | Same_strand|Intronic_coding|NM_001065677 |
©2008 InteRNA Genomics B.V.