cel-mir-245
| absolute | CE1 |
| cel-mir-245 5arm | 1 |
| cel-mir-245 3arm | 3 |
| normalized | CE1 |
| cel-mir-245 5arm | 0.001 |
| cel-mir-245 3arm | 0.002 |
sblock7 (miRBase cel-mir-245) [miRNAknown_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-245 | 0.001 | no | no | 0.39/0.55 | 22/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 1 | 0 0 | 12 11 | 5 5 | 5arm 3arm | 1 1 | nd nd | 0.26 0.18 | 3 3 | 4 | 1 | 2 | 2 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------UUGGUCC---------------------------------------------- | 3 | miR-245 |
| seed | ---------------------------------CUAUUUG--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-245 | -------------------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCTC-------------------------------- | 22 | 3 |
| --------------------------------GCTATTTGCAAGGTACCTAATTG------------------------------------------------------------------------ | 23 | 1 | |
| celegans | --------------------CAATGTTGGAGAGCTATTTGCAAGGTACCTAATTGTTTGATTATTGATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGT--------------------- | ||
| cbriggsae | -----GAAATGGATTGTATTCAATGTCGAAGAGCTGCTTGCAAGGTACCTAATTGTTTGA--CTCTATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTTTATTTAGAGTGATCTTTTTT | ||
| cjaponica | ------------------------------GAGCTGTTTGCAAGGTACCTAATTGTTTGA--AATGATTCTCAATTGGTCCCCTCCAAGCAGCTC-------------------------------- | ||
| cbrenneri | AAATGAAAAAAAATAAAATTCAATGCCGTGGAGCTGCTTGCAAGGTACCTAATTGTTTGAA-ATTCATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTGTTT-----GATTGTTTGTTT | ||
| cremanei | ------------AAAGTACTCAATGTCGAAGAGCTGCTTGCAAGGTACCTAATTGTTTGCACAT---TTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTTTGT--------------TTT | ||
| ***** ********************** ********************** ***** | |||
| celegans | ((((((...(((((((((((...((.(((.(((((...((........)).)))))))).))...)))))))))))...)))))). | 1.000 -31.70 | |
| cbriggsae | ((((.((((((((..(((((.((((((((((((((...((.(((.(((((...(( ......)).)))))))).))...))))))))))).))))))))..))).......))))).)))) | 0.870 -36.11 | |
| cjaponica | ((((((((((...((.(((.(((((...(( (....))).)))))))).))...)))))))))) | 1.000 -23.90 | |
| cbrenneri | (((..((....(((.((((.((((((.(((((((((((((...((.(((.(((((...((( .....))).)))))))).))...))))))))))))).)))))).)))) .))).))..))) | 1.000 -41.90 | |
| cremanei | ((((((..(((((.((((((((((((((...((.(((.(((((......... ....)))))))).))...))))))))))).))))))))..))) ))) | 1.000 -30.82 |
| celegans | chromosome:I:7887372:7887457:1 | intergenic ## {SimpF: WRM0616dH11 1 fosmid,WRM0641bH03 1 fosmid,WRM061aH05 1 fosmid,WRM0631aF11 1 fosmid,WRM0640dB09 1 fosmid} ## {MIR: cel-mir-245} |
| cbriggsae | chromosome:chrI:6757226:6757345:-1 | Same_strand|Intronic_coding|NM_001087019 ## Opposite_strand|Intronic_coding|NM_020433 ## {MIR: cbr-mir-245} |
| cjaponica | chromosome:chrUn:65682801:65682926:-1 | intergenic |
| cbrenneri | chromosome:chrUn:15027901:15028021:1 | intergenic |
| cremanei | chromosome:chrUn:67773124:67773221:1 | intergenic |
©2008 InteRNA Genomics B.V.