miR-Intess: cel-mir-246

cel-mir-246

Cloning frequencies
absolute	CE1
cel-mir-246 3arm	30
normalized	CE1
cel-mir-246 3arm	0.021

block5736 (miRBase cel-mir-246) [miRNAknown_cloningHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-246	0.011	no	no	0.44/0.48	18/22/0.94	0.0	0.0	19	0	1	0	15	4	3arm	1	nd	0.27	3	30	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------UACAUGU-------------------------------------	28	miR-246
seed	--------------------------------------------------------------------ACAUGUU------------------------------------	2	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------TTACATGTTTCGGGTAGGAGCT-----------------------	22	19
cel-miR-246	------------------------------------------------------------------TTACATGTTTCGGGTAGGAGC------------------------	21	5
	------------------------------------------------------------------TTACATGTTTCGGGTAGGAG-------------------------	20	2
	-------------------------------------------------------------------TACATGTTTCGGGTAGGAGCT-----------------------	21	2
	------------------------------------------------------------------TTACATGTTTCGGGTAGG---------------------------	18	2
celegans	-ATCTGAATTATAAAACAT----CGCCTAACCGTTGTCATGTAATATTTCCCAGAGAAAATGA-TATTACATGTTTCGGGTAGGAGCTGTTCAAACTTTGGAC--------
cbriggsae	-----------------AG----CACCTGGCCAATATTATGTAATA--TCAGAAGCAAATTGATTATTACATGTATTGGGTAGGAGCT-----------------------
cjaponica	TACGCGAATCGGTCAACGATGTACGCCTTTCCG---------------TCAAAGAACCATCCAGTG-TACATGT-CCGCATTCGTCAT-----------------------
cbrenneri	-----------------AG----CACCTGGCCGAAATCATGTAATA--TAACAATGAGTTC---TATTACATGTTCCGGGTAGGAGCT-----------------------
cremanei	-GTCCAAACAATAGAACAG----CACCTGGCCGATTTCATGTAATA--TCTGAAAAGAAAAGA-TATTACATGTATCGGGTAGGAGCTGTTTGAGTAAAGGATCTTTCGAA
	* * * * * ******* * * * *
celegans	.((..((......((((. (.((((.(((....(((((((((((.............)) )))))))))...))).)))).).)))).....))..)).	1.000 -25.32
cbriggsae	(( (.((((.((((((.((((((((( ((((.......))))).)))))))))))))).)))).)))	1.000 -25.60
cjaponica	...(((((((((.((....(((((((......( (......))......))) )))))). ))).))))))...	0.997 -17.70
cbrenneri	(( (.((((.(((.((.((((((((( .(((.....))). ))))))))))).))).)))).)))	1.000 -25.30
cremanei	((((........(((((( (.((((.(((((..((((((((( (((.........))) ))))))))).))))).)))).))))))).......))))........	0.984 -42.56

celegans	chromosome:IV:10940104:10940200:1	intergenic ## {SimpF: WRM0618aB12 1 fosmid,WRM063cG12 1 fosmid} ## {MIR: cel-mir-246}
cbriggsae	chromosome:chrIV:5799902:5800038:-1	Opposite_strand\|Intronic_coding\|NM_001111130 ## Same_strand\|Intronic_coding\|NM_001128722 ## {MIR: cbr-mir-246}
cjaponica	chromosome:chrUn:92772728:92772864:1	Opposite_strand\|Exonic_coding\|NM_064652
cbrenneri	chromosome:chrUn:102791807:102791943:-1	intergenic
cremanei	chromosome:chrUn:56770618:56770720:1	Same_strand\|Intronic_coding\|NM_069625

miR-Intess™

cel-mir-246

block5736 (miRBase cel-mir-246) [miRNAknown_cloningHIGH]