miR-Intess: cel-mir-247

cel-mir-247

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-247	0.001	no	no	0.41/0.41	22/22/1.00	nd	nd	0	0	0	0	16	6	3arm	1	nd	0.18	1	0	0	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------GACUAGA----------------------------------------------	0	miR-44/45/61
		len	cloning frequencies

cel-miR-247	-----------------------------------------------------------------------------TGACTAGAGC-CTATTCTCTTCT-------------------------------	22
celegans	-----------------ATTACCAGCTATTTTCCAAGTAGAGAAAAGTTTCTAATTACCCATCATGCACAAATGTGGTGACTAGAGC-CTATTCTCTTCTTGG---AAAAGTGGCGACT------------
cbriggsae	TTTCTAGTATTCCTATTCCGAACTTCCTCCCTCCGAGTAGAGTTCAGACCCTGGTGACCTACAGCAGTAGCATGAGGTGACTAGAGTGCTGAGCTCTCCTTGGTTCAGAGGCATCATATTCATGCTATAAA
cjaponica	--------------AGTTTACACTGCTCTTCTCTAACTTG-----------------------GCCGTGACGAGAAGAGACTAGAGA-------------CAGCTGAAAATT-------------------
cremanei	------------------------ATCTTCTTCCGAGCAGAGAATCGCCCCTAGTGACCCACCACAGTAGTGTGAGGTGACTAGAGC-CAATTCTCTTCTTGGTTGCAAGGT-------------------
	** * * * * ******** * *
celegans	.......(((((((((((((.((((((.((.(((((.(((((...(((......))).))))).))))). )).)))))).))))) .))))))))....	1.000 -37.00
cbriggsae	....((((((...(((...((....((((...(((((.(((((((((((.(((((.((((.((((....)).)))))).))))).)).))))))))).)))))....))))..)))))...))))))....	0.814 -45.50
cjaponica	(((((.((((((((((((((..(((( .......)))).)))))..)))). ))).)).)))))	1.000 -16.40
cremanei	(((((...(((((.(((((((.((..(((((.(((((.(((....))))).))).))))).)) ..))))))).)))))....)))))	1.000 -33.20

celegans	chromosome:X:4756941:4757038:1	intergenic ## {SimpF: WRM068cD04 1 fosmid,WRM067dC01 1 fosmid,WRM0618dA09 1 fosmid,WRM0613aH09 1 fosmid,WRM0641aH07 1 fosmid,WRM0632bG03 1 fosmid,WRM0618bG10 1 fosmid} ## {MIR: cel-mir-247}
cbriggsae	chromosome:chrX:9929398:9929528:1	intergenic
cjaponica	chromosome:chrUn:137271405:137271542:-1	Same_strand\|Intronic_coding\|NM_032085
cremanei	chromosome:chrUn:2834964:2835050:-1	Opposite_strand\|Intronic_coding\|NM_057309