miR-Intess: cel-mir-248

cel-mir-248

Cloning frequencies
absolute	CE1
cel-mir-248 3arm	8
normalized	CE1
cel-mir-248 3arm	0.006

block7654 (miRBase cel-mir-248) [miRNAknown_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-248	0.016	no	no	0.50/0.55	22/24/1.00	0.3	0.0	7	0	1	0	16	4	3arm	1	nd	0.23	2	8	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------ACACGUG---------------------------------------------------	5	miR-248
seed	-------------------------------------------------------------------------------UACACGU----------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------------TACACGTGCACGGATAACGCTC-------------------------------------	22	5
	------------------------------------------------------------------------------ATACACGTGCACGGATAACGCTC-------------------------------------	23	2
	------------------------------------------------------------------------------ATACACGTGCACGGATAACGCT--------------------------------------	22	1
cel-miR-248	------------------------------------------------------------------------------ATACACGTGCACGGATAACGCTCA------------------------------------	24	-
celegans	-----------TTTCCCGGCT-----GCAACTACGGTAAGCGGTA--TCCAGCCGATGTTTTCAATACTGCAT-TTGAATACACGTGCACGGATAACGCTCATTGTTTTTCGCATGC---------------------
cbriggsae	-----------TTTTATTGCAAACTGATATTCACGATAAGCGCTA--TCCTTCCGTTGTATTCAAGCTTGGTTGTCGAGTACACGTGCTCGGATAACGCTCATCGAGTCTGATCGGTTATGTTGGTAAAG--------
cjaponica	------------------GCT-----TCCATTACGATTAGCGCTA--TCCAGCCGAAGTATTCTAGAAAAGAT-TCGAGTACACGTGCACGGATAGTGCTCATTGTTTTTGGAGAGC-----------ACGAAATTCA
cbrenneri	CTTCTGGTATTTTTCTTGGCA-----GTTATCACGATCAGCGCTA--TCCAGCCGTTGTAATCAAGAACGGAGGTTGACTACACGTGCACGGATAACGCTCATTGTCATAGGTTGCC---ATTTTTAAAGTTAAGAAG
ppacificus	-------------------GA-----TCGTTCTCGATGAGTGATACTTCCCACAGT-----------------------TACACGTGCACCGACAGCGGTC-------------------------------------
cremanei	ATTTGCTAGTATTTTTTGGCA-----GAGATTACGATTAGCGATA--TCCAGCCGTTGTATTCAATAGCGCAT-TTGAGTACACGTGCACGGATA-CGCTCATCGTTTTTGTATTGCCACTTCGATTGAGTAAGT---
	** * ** * * * * ********* * ** * * **
celegans	.......((( ((((..(((((.((((.(( (((.((((.(((.(((((........ ))))).))))).))..))))).)))).)))))..)).))).))	1.000 -29.60
cbriggsae	.((((((((((((((((.....((((.((((.(( (((...((.(((((((..((......)).))))))))).....))))).)))).))))......))))))).))).)))))).	0.942 -33.10
cjaponica	((( ((((..(((((.((((((( (((.((((..((((((..(((....) )))))))).)).))..)))))))))).)))))...)))).))) ..........	0.944 -37.60
cbrenneri	(((((...(((((...((((( ..(((.(((((.((((.(( (((.((((.((((.((((.........)))).)))))).))..))))).)))).))))).)))...)))) ).....)))))..)))))	0.995 -37.80
ppacificus	(( (((((.(((.((.(((..(((......))) ..)))...)).))).)))))))	0.994 -15.40
cremanei	(((((((.........((((( (.((..(((((.((((.(( (((.((((.(((((((((........ ))))))))))).))..))))) )))).)))))..))...)))))).........)))))))	0.999 -44.37

celegans	chromosome:X:2262367:2262464:-1	intergenic ## {SimpF: WRM0638dD08 -1 fosmid,WRM0641cB06 -1 fosmid,WRM0631cG01 -1 fosmid,WRM0617dB01 -1 fosmid,WRM0625bA05 -1 fosmid,WRM0620aC04 -1 fosmid} ## {MIR: cel-mir-248}
cbriggsae	chromosome:chrX:4610288:4610404:1	Same_strand\|Intronic_coding\|NM_001087279 ## Opposite_strand\|Intronic_coding\|NM_001046332 ## {MIR: cbr-mir-248}
cjaponica	chromosome:chrUn:6737767:6737867:-1	intergenic
cbrenneri	chromosome:chrUn:1122535:1122662:1	Opposite_strand\|Intronic_coding\|NM_001107657
ppacificus	chromosome:chrUn:145903676:145903813:1	Same_strand\|Intronic_coding\|NM_001110778 ## Opposite_strand\|Intronic_coding\|NM_001085507
cremanei	chromosome:chrUn:103926403:103926528:1	intergenic

miR-Intess™

cel-mir-248

block7654 (miRBase cel-mir-248) [miRNAknown_cloningOK]