C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-251

cel-mir-251

Cloning frequencies
absolute	CE1
cel-mir-251 5arm	6
normalized	CE1
cel-mir-251 5arm	0.004

cel-mir-251 relative cloning frequencies

block8477 (miRBase cel-mir-251) [miRNAknown_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-251	0.001	no	no	0.42/0.50	20/24/1.00	0.0	1.7	6	0	1	0	18	4	5arm	1	nd	0.12	2	6	1	na	na

block8477 hairpin

		reads	miRBase family seed
seed	---------------------------------------UAAGUAG-------------------------------------------------------------------------------------------	6	miR-251
		len	cloning frequencies
			CE1
cel-miR-251	--------------------------------------TTAAGTAGTGGTGCCGCTCTTATT---------------------------------------------------------------------------	24	3
	--------------------------------------TTAAGTAGTGGTGCCGCTCTT------------------------------------------------------------------------------	21	2
	--------------------------------------TTAAGTAGTGGTGCCGCTCT-------------------------------------------------------------------------------	20	1
celegans	------------------ACTTTC--AATGACCCCTTGTTAAGTAGTGGTGCCGCTCTTATTAGG--TTGAAAAGTAATAAGAGTAGTTCACTACTTATCAAGGTGAAATTTGAAA---TTT---------------
cbriggsae	AAATTCTGCTATACTGTTTTGTCCCAAATGACATCTCGTTAAGTAGTGGTGCCGCTCTTATTAGA-ATTATCAAGTAATAAGAGTTGTTCGCTACTTAACGAGAGGAAATTTGGAAAGATGTGTCAGTTGTGAGTTT
cjaponica	--------------TTCAAATTTCAAATTTGTACCTTGTTAAGTAGTGGTGCCGTTCTTATTAAATCTCAAAAAGTAATAAGAGCTGTTCATTACTTATCAAGGTAAAGTTTGACC---TTTGAG------------
cbrenneri	--------------------------------------TTAAGTAGTGGTGCCGCTCTTATTAGA--TGAGATAGTAATAAGAGTTGCTCACTACTTAT--------------------------------------
cremanei	--------------TTCTCGTTCC-AAATAACCCCTTGTTAAGTAGTGGTGCCGCTCTTATTAGA--ATCCAGAATAATAAGAGTCGCTCACTGCTTATCAAGGTGAAATTTGGGTTTTTGTGAG------------
	************** ****** * ********* * ** * ****
celegans	..(((( ((....((((((.((((((((((.((..(((((((((.. (....)..)))))))))..)))))))))))).))))).)....)))))) ...	1.000 -34.80
cbriggsae	((((((.(((((((.(((((...((((((....((((((((((((((((.((.((((((((((.. .........)))))))))).))))))))))))))))))....)))))).))))))))).)))...))))))	1.000 -50.70
cjaponica	.(((((..((((((((.(((((((.((((((((((.((.((((((((((............)))))))))).)))))))))))).))))))))))))))).. ))))).	1.000 -40.70
cbrenneri	.((((((((((.((.((((((((((.. ........)))))))))).)))))))))))).	1.000 -24.90
cremanei	.((.((.((( ((((....(((((.((((((((((.((.((((((((((.. ........)))))))))).)))))))))))).)))))....)))))))....)).)).	0.998 -41.00

celegans	chromosome:X:11004654:11004750:1	intergenic ## {SimpF: WRM0620bA05 1 fosmid,WRM0617cF04 1 fosmid,WRM0638bB10 1 fosmid,WRM061aB08 1 fosmid,WRM0611aB01 1 fosmid,WRM0613dB12 1 fosmid,WRM068cG06 1 fosmid,WRM0618bD01 1 fosmid,F59F3.4 1 Expression_profile} ## {MIR: cel-mir-251}
cbriggsae	chromosome:chrX:5851551:5851686:-1	Opposite_strand\|Intronic_coding\|NM_172925 ## Same_strand\|Intronic_coding\|NM_007496 ## {MIR: cbr-mir-251}
cjaponica	chromosome:chrUn:181820:181927:1	Same_strand\|Intronic_coding\|NM_001044093
cbrenneri	chromosome:chrUn:20061413:20061549:-1	Same_strand\|Intronic_coding\|NM_001104373
cremanei	chromosome:chrUn:33059029:33059136:1	Same_strand\|Intronic_coding\|NM_074370

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