miR-Intess: cel-mir-252

cel-mir-252

Cloning frequencies
absolute	CE1
cel-mir-252 5arm	1141
normalized	CE1
cel-mir-252 5arm	0.797

block1927 (miRBase cel-mir-252) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-252	0.009	no	no	0.43/0.53	18/24/0.99	0.0	0.0	1079	0	1	0	20	7	5arm	1	nd	0.19	1	1141	1	na	na

		reads	miRBase family seed
seed	----------------------------------UAAGUAG----------------------------------------------------------------------------------------------	1118	miR-251
seed	-----------------------------------AAGUAGU---------------------------------------------------------------------------------------------	16	miR-252
seed	--------------------------------------UAGUAGU------------------------------------------------------------------------------------------	7	novel
		len	cloning frequencies
			CE1
	---------------------------------ATAAGTAGTAGTGCCGCAGGT---------------------------------------------------------------------------------	21	1079
	---------------------------------ATAAGTAGTAGTGCCGCAGG----------------------------------------------------------------------------------	20	15
cel-miR-252	---------------------------------ATAAGTAGTAGTGCCGCAGGTAA-------------------------------------------------------------------------------	23	15
	----------------------------------TAAGTAGTAGTGCCGCAGGTA--------------------------------------------------------------------------------	21	8
	----------------------------------TAAGTAGTAGTGCCGCAGGT---------------------------------------------------------------------------------	20	8
	-------------------------------------GTAGTAGTGCCGCAGGTAA-------------------------------------------------------------------------------	19	7
	---------------------------------ATAAGTAGTAGTGCCGCAGGTA--------------------------------------------------------------------------------	22	5
	---------------------------------ATAAGTAGTAGTGCCGCA------------------------------------------------------------------------------------	18	3
	---------------------------------ATAAGTAGTAGTGCCGCAGGTAAC------------------------------------------------------------------------------	24	1
celegans	-------------TCCAGGGGTCTCTTTCAGTTATAAGTAGTAGTGCCGCAGGTAACCGCCAGTCTAAA--AGGCTTACCTACTGCCTTCTGCTTAAAA--TTGAAATATTGATG--------------------
cbriggsae	-----------------GAGGTCTCTCCCAGTTATAAGTAGTAGTGCCGCAGGTAACCGCTTCCAGAAAATTGGTTTACCTACTGCCTTCTGCTTAGAA--TTGGGATTTTGATGACCGTC--------------
cjaponica	-------------------------TTCCGATTATAAGTAGTAGTGCCGCAGGTAACTG------GAGA--TTGATTACCTACTGCCTCCTGCTTAAAA--TTGGAA----------------------------
cbrenneri	CTTTCTATATTCCTTTTTTGGTCTCTTTCAGTTATAAGTAGTAGTGCCGCAGGTAACCG---ATTTCAA--TGGTTTACCTACTGCCTCCTGCTTAGAA--TTGAAATTTCGATGACCGTCTTTTGTAATGAAAG
ppacificus	--------GATCACCTATCACTCTGTCCGGGTTCTAAGTAGTAGTGCCGCAGGTAACCAACAATTGAGA---GGTTTACCTATAGCCTTCTGCTTAACACCTTGAAGAGTTGATC--------------------
cremanei	-------------------GGTCTCTTTCAGTTATAAGTAGTAGTGCCGCAGGTAACCACTCAAATATA--TGGTTTACCTACTGCCTTCTGCTTAGAA--TTGAAATATCGATGACC-----------------
	* ********************* * * ***** ***** * ***
	----- -------------------------------------------------------- ---------------------------- -------------- -----	W02B12.13 W02B12.13 W02B12.13
celegans	.......(((..((((((((.(((((((.((.((.(.((((((..(((........ .))))))))).).)))).))))))).)) ))))))....))).	1.000 -29.50
cbriggsae	..((((((((((((((.(((((((.((.((...(((((((((.((......)).))))).))))...)))).))))))).)) ))))))....)).))))...	1.000 -36.70
cjaponica	.(((((((.(((((((.((.((...((((((... .... ....))))))...)))).))))))).)) ))))).	0.999 -23.60
cbrenneri	(((((..(((........(((((((((((((((.(((((((.((.((...((((((((( ....... ))))).))))...)))).))))))).)) ))))))....)).)))))......)))..)))))	0.971 -34.24
ppacificus	(((((......(((((.((.((((..(((((((.((.((...((((((((........... )))).))))...)))).)))))))..)))).))))))))))))	0.999 -32.30
cremanei	((((((((((((((.(((((((.((.((...(((((((((.......... ))))).))))...)))).))))))).)) ))))))....)).))))	1.000 -30.30

celegans	chromosome:II:11446779:11446876:-1	Opposite_strand\|Intronic_coding\|W02B12.13\|W02B12.13 ## W02B12.13\|protein_coding\|W02B12.13\|Putative uncharacterized protein. [Source:UniProtKB/TrEMBL;Acc:A3FPK4] ## {MIR: cel-mir-252}
cbriggsae	chromosome:chrII:7467787:7467888:-1	Same_strand\|Intronic_coding\|NM_001031311 ## Opposite_strand\|Intronic_coding\|NM_001129175 ## {MIR: cbr-mir-252}
cjaponica	chromosome:chrUn:63338611:63338682:-1	Opposite_strand\|Intronic_coding\|NM_001129175
cbrenneri	chromosome:chrUn:41707048:41707175:1	Opposite_strand\|Intronic_coding\|NM_001056672 ## Opposite_strand\|Boundary_coding\|NM_001129175
ppacificus	chromosome:chrUn:24531069:24531172:1	Same_strand\|Intronic_coding\|NM_001114660 ## Opposite_strand\|Intronic_coding\|NM_174405
cremanei	chromosome:chrUn:8843504:8843598:1	Opposite_strand\|Intronic_coding\|NM_001011005 ## Same_strand\|Intronic_coding\|NM_077846

miR-Intess™

cel-mir-252

block1927 (miRBase cel-mir-252) [miRNAknown_cloningHIGH_randfoldOK]