cel-mir-253
| absolute | CE1 |
| cel-mir-253 5arm | 1 |
| cel-mir-253 3arm | 6 |
| normalized | CE1 |
| cel-mir-253 5arm | 0.001 |
| cel-mir-253 3arm | 0.004 |
sblock53 (miRBase cel-mir-253) [miRNAknown_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-253 | 0.001 | no | no | 0.44/0.55 | 18/22/0.67 | 0.0 nd 0.0 | 0.0 nd 2.3 | 1 0 6 | 0 0 0 | 1 0 1 | 0 0 0 | 24 27 22 | 7 1 10 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.11 0.19 0.18 | 1 2 2 | 7 | 1 | 8 | 9 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------------UAGUAGG------------------------------------------------- | 6 | novel |
| seed | ----------------------------------------------CACACAC----------------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------ACACCUC-------------------------------------------------------------------------------------- | 0 | miR-253 |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------------------------------------TTAGTAGGCGTTGTGGGAAGGG----------------------------------- | 22 | 2 | |
| cel-miR-253 | -------------------------------------------------------------------------------------TTAGTAGGCGTTGTGGGAAGG------------------------------------ | 21 | 2 |
| -------------------------------------------------------------------------------------TTAGTAGGCGTTGTGGGA--------------------------------------- | 18 | 2 | |
| ---------------------------------------------TCACACACCTCACTAACA------------------------------------------------------------------------------- | 18 | 1 | |
| cel-miR-253* | ------------------------------------------------CACACCTCACTAACACTGA-CC------------------------------------------------------------------------ | 21 | - |
| celegans | ---------------------GAATTGTTCCGATCGCCGCTCTTTTCACACACCTCACTAACACTGA-CCACCGATGCATAGATGTTAGTAGGCGTTGTGGGAAGGGCGGCGACAGTGAACGTCGTTTC------------- | ||
| cbriggsae | ---------TTTTAATTAACAACATTTTTCGAGTTTCAGTCCTTCTCACACACCTCACTAACACTAA-CTACAGATTTCTAGATGTTAGTAGGCGTTGTGGGAAGGGCGGAGATGACGAATACTTTGTGCAATTGAAG---- | ||
| cjaponica | GTAATCGGATTGTTTTTTGTTGAATATTTCGAGTTGCAGCCATTCTCACACACCTCACTATCACAGA--CGCGATCGTCTAGATGTTAGTAGGCGTTGTGGGAAGGGCGGCGATGGCGAAAAGTTTGGAAACATGTGATAAC | ||
| cbrenneri | --------------TCCTGAATACTCATTCGATGTTCCACCCTTTTCACACACCTGACTAACACAAAACCGCAGATGTATTGATGTTAGTAGGCGTTGTGGGAAGGGTGGCGATGATGAGCATATTTTCATGA--------- | ||
| cremanei | ---------------------------------------CCCTTTTCACACACCTCACTAACACTAA-ACACAGATTGATAGATGTTAGTAGGCGTTGTGGGAAGGG----------------------------------- | ||
| ** ********** **** *** * * * ************************** | |||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | F44E7.5b F44E7.5 F44E7.5 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | F44E7.5a F44E7.5 F44E7.5 | ||
| celegans | ((...(((((..(((((((((((..(((((.(((.((((((((((. .((....))..))).)))))))))).).))))..)))))))))))..).)))).))..... | 1.000 -47.90 | |
| cbriggsae | .(((((((.((((.....((((.(((((.(((((((((((((.(((.((((((((((. ...........))).)))))))))).)).))))))))))).)))))..))))....))))..))))))). | 1.000 -46.10 | |
| cjaponica | ...((((.((.((((((....((((.(((((.(((((.(((.(((((((((.(((.((((.((.((( ((....)))))...)).))))))).)).))))))).))).)))))..))))).)))))))))))).))))... | 0.997 -48.00 | |
| cbrenneri | ((.((((..((((((....(((((((((((..(((((.(((.((((((((((.((.......)).))).)))))))))).)).)))..)))))))).)))))))))......)))).)) | 0.985 -43.10 | |
| cremanei | (((((..(((((.(((.((((((((((. ...........))).)))))))))).)).)))..))))) | 1.000 -27.40 |
| celegans | chromosome:V:5780493:5780599:-1 | Same_strand|Intronic_coding|F44E7.5a|F44E7.5 ## F44E7.5|protein_coding|F44E7.5|F44E7.5b [Source:RefSeq_peptide;Acc:NP_872177] ## {SimpF: WRM0634bH03 -1 fosmid,WRM0641cE05 -1 fosmid,WRM0629cG12 -1 fosmid,WRM0632dC09 -1 fosmid} ## {MIR: cel-mir-253} |
| cbriggsae | chromosome:chrV:9138929:9139056:-1 | Same_strand|Intronic_coding|NM_001011629 ## Opposite_strand|Intronic_coding|NM_062593 ## {MIR: cbr-mir-253} |
| cjaponica | chromosome:chrUn:55160315:55160454:1 | intergenic |
| cbrenneri | chromosome:chrUn:46020867:46020985:-1 | Same_strand|Intronic_coding|NM_072114 |
| cremanei | chromosome:chrUn:141474098:141474244:-1 | Same_strand|Intronic_coding|NM_072673 |
©2008 InteRNA Genomics B.V.