logoC.elegans small RNAs


miR expression

cel-mir-256

cel-mir-256

block6551 (miRBase cel-mir-256) [miRNAknown_shortStem_bulgeHIGH]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBase cel-mir-2560.058nono0.38/0.3821/21/1.00nd
nd
0
0
0
0
3
13
3arm
1
nd
0.24
4
00nana
block6551 hairpin
  readsmiRBase family seed
seed-------------------------------------------------------------GGAAUGC----------------0novel
  lencloning frequencies
   
cel-miR-256------------------------------------------------------------TGGAATGCATAGAAGACTGTA---21
celegansgagtgcagaggcttactatgagacggtcaagaggcgcctccgtcacgtggatacgtcgggTGGAATGCATAGAAGACTGTActc 
 ************************************************************************************ 
celegans((((((((...(((.(((((......(((...((((..((((.....))))..))))...)))....)))))))).))))))))0.800 -28.80

celeganschromosome:V:6956037:6956120:-1intergenic ## {SimpF: WRM061aB06 -1 fosmid,WRM0617cA05 -1 fosmid,WRM0639bB06 -1 fosmid} ## {MIR: cel-mir-256}


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