miR-Intess: cel-mir-257

cel-mir-257

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-257	0.004	no	no	0.50/0.57	21/22/1.00	nd 0.0	nd 0.0	0 1	0 0	0 1	0 0	15 24	15 7	5arm 5arm	1 1	nd nd	0.18 0.29	1 2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------AGUACC----C----------------------------------------------------------------------	1	novel
seed	----------------AGUAUCA-----------------------------------------------------------------------------------	0	novel
		len	cloning frequencies
			CE1
	------------------------GAGTACC----CAGTGATCGCCTTC---------------------------------------------------------	21	1
cel-miR-257	---------------GAGTATCAGGAGTACC----CAGTGA-----------------------------------------------------------------	22	-
celegans	ATAATATTTCCCGCTGAGTATCAGGAGTACC----CAGTGATCGCCTTCACATATTGGGAAGAAGTATGTGATTGCGTCCTGCAGTTCTTCCATGATGTACTCAGG
cbriggsae	---------------GAGTATCAGGAGAATCAGAGAAATGATATTTTGAATTTTCTAAAAGAAATTCAAATATTGAAGACTGA----TTTTCATGA-ATACCC---
	************ * * * **** * * * * * ** * ** * * * *
celegans	.............((((((((((((((.((. (((.((.(((..(((((((((.......)))))))))..))))))))..))..)))).)))..))))))).	1.000 -33.80
cbriggsae	..((((((.(((((((((......((((.((((((((((......)))))))))))))).....)))) ))))).))) .)))..	0.999 -21.50

celegans	chromosome:V:17140637:17140738:1	intergenic ## {SimpF: WRM0640aH01 1 fosmid,WRM0634cB09 1 fosmid,WRM0636cC05 1 fosmid,WRM0627bC04 1 fosmid,WRM0614cF07 1 fosmid,WRM0622dB08 1 fosmid,WRM0641aD01 1 fosmid,WRM0611aG03 1 fosmid,WRM0638aE05 1 fosmid,WRM0639bG06 1 fosmid,WRM066bB01 1 fosmid,WRM066dE06 1 fosmid,WRM0622dH05 1 fosmid,WRM0619dB07 1 fosmid,WRM0625bF02 1 fosmid} ## {MIR: cel-mir-257}
cbriggsae	chromosome:chrII:4706533:4706674:1	Opposite_strand\|Intronic_coding\|NM_061909 ## Same_strand\|Intronic_coding\|NM_001047951