miR-Intess: cel-mir-259

cel-mir-259

Cloning frequencies
absolute	CE1
cel-mir-259 5arm	34
normalized	CE1
cel-mir-259 5arm	0.024

block6662 (miRBase cel-mir-259) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-259	0.001	no	no	0.33/0.43	21/25/0.97	0.0	0.0	30	0	1	0	18	1	5arm_loop	1	nd	0.13	1	34	1	na	na

		reads	miRBase family seed
seed	---------------------------------------AAUCUCA-------------------------------------------------------------------------------------------------	31	miR-259
seed	------------------------------------------CUCAUCC----------------------------------------------------------------------------------------------	2	novel
seed	--------------------------------------AAAUCUC--------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------AAATCTCATCCTAATCTGGTAG---C-------------------------------------------------------------------------------	23	30
	-----------------------------------------TCTCATCCTAATCTGGTAG---CA------------------------------------------------------------------------------	21	2
	-------------------------------------TAAATCTCATCCTAATCTGGT-------------------------------------------------------------------------------------	21	1
	--------------------------------------AAATCTCATCCTAATCTGGTAG---CAT-----------------------------------------------------------------------------	25	1
cel-miR-259	--------------------------------------AAATCTCATCCTAATCTGGTAG---CA------------------------------------------------------------------------------	24	-
celegans	--------------------TCAGTCATTGAAACGAGTAAATCTCATCCTAATCTGGTAG---CATCTTTCGAACCT----TGCCACCGATTTGGC-ATGGGATTGACT--TGTTAAATAGTGACTTTTTT------------
cbriggsae	---------TCAGGTTGGTGATAGTCATCGAAACGAGTAAATCTCATCCTAATCTGGTTG---CATTTTCAATACTTTT--TGCTACCGATTTGGT-TTGGGATTGGCT--TGTCTAGTATTGACATTTTATTGATATACTGA
cjaponica	--------GGTAAGCTCTGTTTTGTCAGCAATACGAGTAAATCTCATCCTAATCTGGTCGCAAAATTATCAAAATGGACAATGCTACCGGTTCGGCTTTGGGATTGACTCGTGTTTAGAACTGACACTTTCTTCC--------
cbrenneri	CGAATCAAAAAAGGTAAGTGATTGTCAGTGAAACGAGTTAATCTCATCCTAATCTGGTCG---CATCACAAAACTTACC--TGCTACCGATTTGGC-TTGGGATTGACT--CGTTGAATTTTGACTATTGTCCTAGTTTTCG-
cremanei	--------------------------------------AAATCTCATCCTAATCTGGTTGACACAACACAAGGAAG-----TGCTACCGATTTGGC-TTGGGATTG-------------------------------------
	******************* * * * ******
celegans	..((((((((.(((((((.((((((((((.((((.(((.( ((............ ))).))))))).)). )))))))).))) ))))...)))))))).....	1.000 -35.30
cbriggsae	((((((..((((..((((.....((((((.(((((((..((((..((((.( ((.............. ))).))))..)))). .))))))).))) ))).......))))...))))..))...))))	0.936 -36.54
cjaponica	..............((((((.(((((((((.(((((((.((.((.(((((.(((...((.((......)).))))).))))))).))...))))))).))))))))).....)))))).........	0.879 -35.00
cbrenneri	(((...(((..(((....((((.(((((...(((((((((((((((..((((..((((.( ((.............. ))).))))..)))). .))))))))))) )))).....))))).)))).)))..))))))	0.983 -39.44
cremanei	.(((((((..((((..((((...(((...........) ))..))))..)))). .))))))).	0.987 -16.10

celegans	chromosome:V:10538996:10539096:-1	intergenic ## {SimpF: WRM0616dG08 -1 fosmid,WRM061dC04 -1 fosmid,WRM063dB11 -1 fosmid,WRM0613bH10 -1 fosmid,WRM061dD06 -1 fosmid} ## {MIR: cel-mir-259}
cbriggsae	chromosome:chrV:7917229:7917354:1	Opposite_strand\|Intronic_coding\|NM_080814 ## Same_strand\|Intronic_coding\|NM_070877 ## {MIR: cbr-mir-259}
cjaponica	chromosome:chrUn:47919156:47919282:-1	Same_strand\|Intronic_coding\|NM_021343
cbrenneri	chromosome:chrUn:67725522:67725655:1	intergenic
cremanei	chromosome:chrUn:57576526:57576666:-1	Opposite_strand\|Intronic_coding\|NM_001114256 ## Same_strand\|Intronic_coding\|NM_067581

miR-Intess™

cel-mir-259

block6662 (miRBase cel-mir-259) [miRNAknown_cloningHIGH_randfoldOK]