miR-Intess: cel-mir-261

cel-mir-261

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-261	0.889	no	no	0.32/0.32	19/19/0.00	nd	nd	0	0	0	0	15	-9	3arm_loop	1	nd	0.42	4	0	0	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------AGCUUUU------------------------------------	0	novel
		len	cloning frequencies

cel-miR-261	--------------------------------------------------------------------TAGCTTTT-TAGT--TTTCACG----------------------	19
celegans	TGATGGCTTTTCTGGATTTGTTCCCTTCACGTGTAGAAAGAAACGAGCAAAAAAAATCTTAGTGT---TAGCTTTT-TAGT--TTTCACGGTGAATATGGATATT-------
cbrenneri	GGATGAATGCAAAGAAAAGTTGCCGACTAT-----CGAAGAAGCGACAAAAATGCATTATCAACTGAACAGCTTTTTTGATTGTTTCTCGATTGCTGCTGATATTGCCCACC
cjaponica	CGAAAA-------AAATTGGT----------------ACAAAACTTTCAAAAAAAA-----AATTGCAGAGCTTTTGTTGT--TTTTTCG----------------------
	** * * * ** * **** * * ******* * * *
	<<<<<<................................................................ ........ .... ...................... .....	B0034.4 B0034.4 B0034.4
celegans	.....(((((((((.((.((.......)).)).)))))......))))........((...(((. .((((... .))) )..)))...))...........	1.000 -14.50
cbrenneri	((.((...((((.....(((.((.....(( ((.((((((((((((((.((....((....))...)).)))))).)))))))))))).)).)))....)))).))))	0.988 -24.50
cjaponica	(((((( ((...... (((((((((((((...... ..))).)))).))))))..) )))))))	0.999 -11.10

celegans	chromosome:II:5969021:5969119:1	intergenic ## {SimpF: WRM0628aH10 1 fosmid,WRM0627cF01 1 fosmid,WRM0634dD10 1 fosmid,WRM0632bD02 1 fosmid,WRM0612dB10 1 fosmid,WRM0624cG04 1 fosmid,WRM0634aB06 1 fosmid,WRM0614aH11 1 fosmid,WRM0622dH03 1 fosmid} ## {MIR: cel-mir-261}
cbrenneri	chromosome:chrUn:84845634:84845740:1	Opposite_strand\|Intronic_coding\|NM_001022802
cjaponica	chromosome:chrUn:14565971:14566109:-1	Same_strand\|Boundary_coding\|NM_001029165