C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-262

cel-mir-262

block7527 (miRBase cel-mir-262) [miRNAknown_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-262	0.592	no	no	0.35/0.35	20/20/1.00	nd	nd	0	0	0	0	15	3	3arm	1	nd	0.45	5	0	0	na	na

block7527 hairpin

		reads	miRBase family seed
seed	--------------------------------------------------------------------------UUUCUCG---------------------------	0	novel
		len	cloning frequencies

cel-miR-262	-------------------------------------------------------------------------GTTTCTCGATGTTTTCTGAT---------------	20
celegans	gtgcaaaattgtattaaaataaactttattggattacaaaaaaaatgtatcaatttttctttttcatttttacGTTTCTCGATGTTTTCTGATactgttgctagcagt
	************************************************************************************************************
celegans	(((((....))))).......(((..(((..((..(((....(((((((.....................))))))).....)))..))..)))..))).........	1.000 -13.40

celegans

chromosome:V:18736648:18736755:1

intergenic ## {SimpF: WRM0620bC12 1 fosmid} ## {MIR: cel-mir-262}

©2008 InteRNA Genomics B.V.