C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-266

cel-mir-266

block8246 (miRBase cel-mir-266) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-266	0.001	no	UNKNOWN	0.50/0.50	20/20/1.00	nd	nd	0	0	0	0	22	3	5arm	1	nd	0.00	0	0	0	na	na

block8246 hairpin

		reads	miRBase family seed
seed	-----------------------GGCAAGA---------------------------------------------------------------------------------------------------------	0	miR-73/74
		len	cloning frequencies

cel-miR-266	----------------------AGGCAAGA----------------CTTTGGCAAAGC-----------------------------------------------------------------------------	20
celegans	TGTCTAAACTTGGGCAAAAGTTAGGCAAGA----------------CTTTGGCAAAGC-------------------------TTGAATCCAAGTTTTGCCAAAGTTTTGCCCAACTTTTGCCCAAATTCAGCCA
cremanei	----------------------AGGCAAGA-----------------------------------------------------CCGAGACACACTCTCCAAGTGGTCGTTTTCCA--------------------
cbriggsae	----------------------TGGCAAGA----------------GTGTGGAAAAGTGTCT---------------------GGAGATCAGACGAATGCTGAAATTCTTGGGC---------------------
cbrenneri	----------------------TGGCAAGATCCATTAGCGCCTTCTGTCGTGCTAGATGGTACTC------------------AGAGATCCAATGCCT-------------------------------------
cjaponica	----------------------AGGCAAGA----------------GACGGGCAGAATAGCA---------------------ATAACTCGCAGTTTTCTCAACTTTTATCGCCA--------------------
ppacificus	----GGAACGATGAGCAGAAGCAGGCAAGA----------------GAGGGCATAGGTAGCACTCTTGCACCCTCTTTGCCTGATAATTCAAAATTATTCCATAAACTTGCACAACTG-----------------
	******* * *
celegans	.(.((.((.(((((((((((((.((((((( (((((((((((( (((....)))))))))))))))))))))).))))))))))))).)).)).).	1.000 -57.30
cremanei	.((.(((( (...(((.((((.....)))))))))))))).	0.993 -10.70
cbriggsae	...((((( ((..((.....((((( (.....))))))....))...)))))))...	1.000 -14.90
cbrenneri	.((((.((((....((..((.((((......)))).))..)). ...))))...)))).	0.889 -16.10
cjaponica	.((((((( (..(((.(((((.((. .......)).))))))))..)))))...))).	0.998 -13.80
ppacificus	((((..((.....(((.(((((.((( (((((..((((.......))))..)))))))))))))....)))...))..)))).................	0.981 -30.30

celegans	chromosome:X:3755135:3755228:1	intergenic ## {Repeats: Ce000066 87 107 1 class=UNKNOWN} ## {SimpF: WRM067bH01 1 fosmid,WRM0613cH07 1 fosmid,WRM0618bD11 1 fosmid,WRM0617bH09 1 fosmid,WRM0633aC01 1 fosmid,WRM0627dF05 1 fosmid,WRM063dB04 1 fosmid} ## {MIR: cel-mir-266}
cremanei	chromosome:chrUn:116109270:116109403:1	intergenic
cbriggsae	chromosome:chrIV:4947211:4947344:1	Same_strand\|Intronic_coding\|NM_168571 ## Opposite_strand\|Intronic_coding\|NM_001123230 ## Same_strand\|Boundary_coding\|NM_133378 ## Same_strand\|Exonic_coding\|NM_069872 ## Same_strand\|Boundary_non-coding\|NM_166790
cbrenneri	chromosome:chrUn:6511836:6511969:1	Opposite_strand\|Boundary_non-coding\|NM_064891
cjaponica	chromosome:chrUn:94347566:94347699:1	Same_strand\|Intronic_coding\|NM_073427
ppacificus	chromosome:chrUn:148505882:148505979:1	intergenic

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