miR-Intess: cel-mir-268

cel-mir-268

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-268	0.002	no	no	0.42/0.42	24/24/1.00	nd	nd	0	0	0	0	17	5	5arm	1	nd	0.17	2	0	0	na	na

		reads	miRBase family seed
seed	------------------------GCAAGAA-----------------------------------------------------------------------------------	0	miR-268
		len	cloning frequencies

cel-miR-268	-----------------------GGCAAGAATTAGAAGCAGT-TTGGT------------------------------------------------------------------	24
celegans	------GGAAGTGGCTTTGAAGCGGCAAGAATTAGAAGCAGT-TTGGTGTCAGACACACT-ACTCACTCACTGCTTCTTGTTTTTTCTGCTTTCTTTGCTTTT-----------
cbriggsae	GGGAAAGGAAGTGTCTTTGAAGCGGCAAGAATTAGAAGCAGTTTTGGTGTCAGACACACTCACTGACTCACTGCTTCTTGTTTTTCTTCTTCTTCTTCTTCTGCTTCTTCTTCC
cbrenneri	-----------------------GGCAAGAATTAGAAGCAGTTTTGGTGTCAGACAC--------ACTCACTCCTTCTTGTTTTTTCT--------------------------
cremanei	-----------------------GGCAAGAATTAGACGGGGT-----GGCTCGACAC-----------CACCA-GTCTTGTTTTTTTC--------------------------
	************* * ** * *** * **********
celegans	.((((..(....(((((((.((((((.((((((((( ..((((..((.....)) ...)))).))))))))).)))))).)))))))..)..)))).	1.000 -32.60
cbriggsae	((((.(((((((......((((.((.(((((..(((((((((...((.(((((.........)))))))))))))))).....))))))).)))).......))))))).))))	0.999 -36.22
cbrenneri	((.((((((.(((((.(((...(((((.....)) ))).))).))))).)))))).))	1.000 -13.60
cremanei	...((((((.((((((((( (......))) ).)). )))).))))))...	1.000 -16.00

celegans	chromosome:V:11137087:11137181:1	intergenic ## {SimpF: WRM0635dB04 1 fosmid,WRM0630cC08 1 fosmid,WRM0634bB08 1 fosmid} ## {MIR: cel-mir-268}
cbriggsae	chromosome:chrV:7334131:7334244:-1	Same_strand\|Intronic_coding\|NM_125760 ## Opposite_strand\|Intronic_coding\|NM_134696 ## {Repeats: (GAA)n 3 46 -1 class=Simple_repeat} ## {SimpF: trf} ## {MIR: cbr-mir-268}
cbrenneri	chromosome:chrUn:67478937:67479071:1	Same_strand\|Intronic_coding\|NM_001114364
cremanei	chromosome:chrUn:20043304:20043438:-1	intergenic