miR-Intess: cel-mir-270

cel-mir-270

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-270	0.017	no	no	0.55/0.55	20/20/1.00	nd	nd	0	0	0	0	12	11	3arm	1	nd	0.15	2	0	0	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------GCAUGAU----------------------------------------	0	novel
		len	cloning frequencies

cel-miR-270	-------------------------------------------------------------------------------------------GGCATGATG-TAGCAGTG--GAG-------------------------	20
celegans	------GTCGCTAGCCTCTT---------TACCTGCCTACACACCTT-TCTGCCTACGTGGCACATTGGTAGGCAAGA------------GGGCATGATG-TAGCAGTG--GAGATGGACTGCCAC-------------
cbrenneri	---------------CTTTT---------TCTCTG-----ACACTCT-CATGCACTCACG------TGAGGGATGAAATCCCACACGCACGCGCATGATGATGTCAGTG--AGGAGG----------------------
ppacificus	TACTTGGTGGTAGGGCTGTTAAAATGAAGAACTCGTCTCCCCATTCCACGTGCTCTCTCGTCACTCTGATCGGCGAGA------------GAGCATGATGAATGAAGAGACGGAAGAGACGGTTACAGCCCTACTTGTA
	* * * * ** * * * * ****** * *
celegans	...((.(((((((( (((.(((.(((((((((( ..(((((((...........)))))))..) )))..)).)) )))))))) )))).)).))))...	1.000 -36.10
cbrenneri	((((( ((.((( (((.((( (((((.....(( ((.(((((...))))).)))).....)))))).)))))))).) ))))))	1.000 -35.50
ppacificus	........(((((((((((.....((......(((((((..(((((..((((((((((((((.........))))))) )))))))..)))))..)))))))......))...)))))))))))....	0.994 -58.80

celegans	chromosome:IV:3258451:3258545:-1	intergenic ## {SimpF: WRM0638aG10 -1 fosmid} ## {MIR: cel-mir-270}
cbrenneri	chromosome:chrUn:100735507:100735585:-1	intergenic
ppacificus	chromosome:chrUn:115473103:115473229:1	Opposite_strand\|Intronic_coding\|NM_203861