miR-Intess: cel-mir-271

cel-mir-271

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-271	0.005	no	DNA	0.60/0.60	20/20/1.00	nd	nd	0	0	0	0	23	1	5arm	1	nd	0.10	1	0	0	na	na

		reads	miRBase family seed
seed	-----------------------------------------CGCCGGG---------------------------------------------------------------------------------	0	novel
		len	cloning frequencies

cel-miR-271	----------------------------------------TCGCCGGGTGGGA--AAGCATT-------------------------------------------------------------------	20
celegans	-----------------AATAGAAAACGGGGCCCGCCGGCTCGCCGGGTGGGA--AAGCATTCGACAGCAAGACGTGTTTTTCA--------ATCTGCGACTCGGCGATTCCC-ATCATCACT------
cremanei	----------------------------------------CCGCCGGGAAATTCTAGG------------AGAGTC------------------------CGCGACGATTCTCTAGAAGTCCGGTGG--
cbriggsae	-----------------------------GGTGACCCGGCCCGCCGGGCCGGGCCGGG---TCGAAAAAAAAATCT------------------------TCCGGCCCGGCCCGGTCGGCCCGGGTACC
cjaponica	TTGCCAGGCAGAGAGTGTGTAAGCGATGCCGCGCTGCGCCGCGCCGGGTGGCGACGAGGCGCAGACTGCGAGAGTGCGTTGTCATTCGACGCAACCGCGGCGCGGCGCGTCGACATCGG--CGGCAA--
	******* * * * ** * * *
celegans	..........((((..(((((..((((.((((.((( ((((((((........)).))))))))). ))))))))..)))))..)))) .........	1.000 -36.70
cremanei	((((((((...(((((.( (((((( ......)))))))))))).))))))))	1.000 -27.60
cbriggsae	(((.((((((.(((((((((((((((((( ..((........)). ))))))))))))))).))).)))))))))	1.000 -58.90
cjaponica	.((((..((...((...(((..(((.((((((((((((..(((.((((((((((((...(((.....)))......)))))))))))).)))...)))))))))))))))..))))).) ))))).	0.836 -65.80

celegans	chromosome:X:3411992:3412086:1	intergenic ## {SimpF: WRM0620aA11 1 fosmid,WRM0618dH04 1 fosmid,WRM0627bE05 1 fosmid,WRM0631aG02 1 fosmid,WRM0624cH01 1 fosmid,WRM0615dE08 1 fosmid,WRM0637dG11 1 fosmid,WRM0631cF07 1 fosmid,WRM0624dD03 1 fosmid,WRM0638aH11 1 fosmid,WRM069aE06 1 fosmid} ## {MIR: cel-mir-271}
cremanei	chromosome:chrUn:102249215:102249349:1	Same_strand\|Intronic_coding\|NM_071374
cbriggsae	chromosome:chrX:11365346:11365418:-1	Opposite_strand\|Intronic_coding\|NM_004906 ## Same_strand\|Intronic_coding\|NM_001122952 ## {Repeats: MuDR-14_CB 1 375 -1 class=DNA} ## {SimpF: trf}
cjaponica	chromosome:chrUn:30767042:30767166:-1	Opposite_strand\|Boundary_non-coding\|NM_172084 ## Same_strand\|Intronic_coding\|NM_001006872 ## Opposite_strand\|Intronic_coding\|NM_001028132