miR-Intess: cel-mir-273

cel-mir-273

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-273	0.001	no	no	0.65/0.65	20/20/1.00	nd	nd	0	0	0	0	16	3	3arm	1	nd	0.10	2	0	0	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------GCCCGUA-----------------------------	0	novel
		len	cloning frequencies

cel-miR-273	-----------------------------------------------------------------TGCCCGTACTGTGTCGGCTG-----------------	20
celegans	ACCTC---GTTTTGGGAGCAGC--CGGCATTTT--ACGGGCTACACTTTTTTTAAAATTGATGTGTGCCCGTACTGTGTCGGCTGCTTTGAAAATTTCGGT-
cjaponica	TTGTCAAAGTTCTATTCGCCACGGAGACATTCTCGATGGGC----------TTAAAC---ATGCCCGCCCGTAC--TGTCGTCTTC-------ACGTCGGCG
	* * ** * * **** * * ** * * ****** * * * ****
	++++++++++ ++++++++++++++ +++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	E01F3.1b E01F3.1 pde-3
celegans	(((.. (((((.(((((((( ((((((..( ((((((.((((................)))))))))))..)))))))))))))).)))))...)))	1.000 -48.69
cjaponica	................((((((((((((((...((.((((( ...... ..)))))..))... .)).))).)) .))).))))	0.977 -22.30

celegans	chromosome:II:14946941:14947034:1	Same_strand\|Intronic_coding\|E01F3.1b\|E01F3.1 ## Same_strand\|Boundary_non-coding\|E01F3.1a\|E01F3.1 ## E01F3.1\|protein_coding\|pde-3\|Probable 3',5'-cyclic phosphodiesterase pde-3 (EC 3.1.4.17). [Source:UniProtKB/Swiss-Prot;Acc:Q8I0P7] ## {SimpF: WRM0623dE11 1 fosmid,WRM0640dF03 1 fosmid} ## {MIR: cel-mir-273}
cjaponica	chromosome:chrUn:104330552:104330631:1	Same_strand\|Exonic_coding\|NM_069356 ## Same_strand\|Intronic_coding\|NM_210683 ## Opposite_strand\|Intronic_coding\|NM_011212