miR-Intess: cel-mir-34

cel-mir-34

Cloning frequencies
absolute	CE1
cel-mir-34 5arm	341
cel-mir-34 3arm	2
normalized	CE1
cel-mir-34 5arm	0.238
cel-mir-34 3arm	0.001

sblock61 (miRBase cel-mir-34) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-34	0.004	no	no	0.50/0.61	18/22/0.99	0.0 0.0	0.0 0.0	307 2	0 0	1 1	0 0	15 27	2 5	5arm 3arm	1 1	nd nd	0.14 0.17	1 2	343	1	2	-1

		reads	miRBase family seed
seed	--------------------------GGCAGUG---------------------------------------------------------------------------------------------	340	miR-34
seed	----------------------------------------------------------------CGGCUAC-------------------------------------------------------	2	novel
seed	------------------------------GUGUGGU-----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
cel-miR-34	-------------------------AGGCAGTGTGGTTAGCTGGTTG-------------------------------------------------------------------------------	22	307
	-------------------------AGGCAGTGTGGTTAGCTGGTT--------------------------------------------------------------------------------	21	29
	---------------------------------------------------------------ACGGCTAC--------CTTCACTGCC-------------------------------------	18	2
	-------------------------AGGCAGTGTGGTTAGCTGGT---------------------------------------------------------------------------------	20	2
	-------------------------AGGCAGTGTGGTTAGCTG-----------------------------------------------------------------------------------	18	1
	-----------------------------AGTGTGGTTAGCTGGTTG-------------------------------------------------------------------------------	18	1
	-------------------------AGGCAGTGTGGTTAGCTGG----------------------------------------------------------------------------------	19	1
celegans	----------CGGACAATGCTCGAGAGGCAGTGTGGTTAGCTGGTTGCATATTTC-CTTGACAACGGCTAC--------CTTCACTGCCACCCCGAACATGTCGTCCATCTTTGAA----------
cbriggsae	-------------------------AGGCAGTGTGGTTAGCTGGTTGCATACACAGGTTGACAACGGCTAC--------CTTCACTGCCA------------------------------------
cjaponica	CTCTCCACAATGGACGGTGCTCGGGAGGCAGTGTGGTTAGCTGGTTGCATGATGT-TTTGACAACGGCTAC--------CTTCACTGCCACCCCGATCATGTTGTCCATCTTTGAACATTGGTGAG
cbrenneri	-------------------------AGGCAGTGTGGTTAGCTGGTTGCATACTGACATTGACAACGGCTAC--------CTTCACTGCCA------------------------------------
ppacificus	-------------------------GGGCAGTGTGTTTG--TGATGCCATCTATTTCAGCACAATGGCAACATCGAGGACTTCATTGC-------------TCATTTTTTTTGGCA----------
cremanei	-----------GGACGGTGCTCGAGAGGCAGTGTGGTTAGCTGGTTGCATATTGA-ATTGACAACGGCTAC--------CTTCACTGCCACCCCGAACATGTAGTCC-------------------
	******* ** * * * * *
celegans	.((((.(((.(((.(.(((((((.(((.(((((.(((((...... ..)).)))))))))) )..))))))).)..))).)))...)))).........	1.000 -37.00
cbriggsae	.(((((((.((.(((((.((((((.((....)))).)))))))))) )..))))))).	1.000 -26.10
cjaponica	(((.(((((((((((((((.(((((.(((((((.((.(((((.((((((...... ..)).)))))))))) )..)))))))..))))).)))..)))))))...)).....))).)))	0.965 -48.50
cbrenneri	.(((((((.((.(((((.((((((.........)).)))))))))) )..))))))).	1.000 -25.70
ppacificus	((((((((.(((.. (((((((((.............))))))...)))..)))..)))))) )).............	0.995 -21.72
cremanei	((((.(((.(((...(((((((.((.(((((.((((((...... ..)).)))))))))) )..)))))))....))).)))...))))	1.000 -34.70

celegans	chromosome:X:2969744:2969840:-1	intergenic ## {SimpF: WRM0618bF01 -1 fosmid,WRM0614aG02 -1 fosmid} ## {MIR: cel-mir-34}
cbriggsae	chromosome:chrX:3899317:3899453:1	Opposite_strand\|Intronic_coding\|NM_076104 ## Same_strand\|Intronic_coding\|NM_181850 ## {MIR: cbr-mir-34}
cjaponica	chromosome:chrUn:18910363:18910479:1	Opposite_strand\|Intronic_coding\|NM_010452
cbrenneri	chromosome:chrUn:541727:541863:1	intergenic
ppacificus	chromosome:chrUn:134082778:134082853:1	intergenic
cremanei	chromosome:chrUn:33757035:33757121:1	Opposite_strand\|Intronic_coding\|NM_001107657

miR-Intess™

cel-mir-34

sblock61 (miRBase cel-mir-34) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]