miR-Intess: cel-mir-353

cel-mir-353

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-353	0.001	no	no	0.38/0.38	21/21/1.00	nd	nd	0	0	0	0	8	11	5arm	1	nd	0.29	4	0	0	na	na

		reads	miRBase family seed
seed	---------AAUUGCC-------------------------------------------------------------------	0	novel
		len	cloning frequencies

cel-miR-353	--------CAATTGCCATGTGTTGGTATT------------------------------------------------------	21
celegans	GACGGGCACAATTGCCATGTGTTGGTATTATTGCTTCAAGTTATTT--GAAGCTGTAATATCAATAAGCATGTCTCGT-----
cremanei	--------CAATTGCCAAATACGGTGCCCGCCTCCACAATATATTTCGGAGACTGGAA-------------GTCCCGTTGTTG
	********* * * * * * * * *
	+++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++ +++++	D1007.12.2 D1007.12 rpl-24.1
	+++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++ +++++	D1007.12.1 D1007.12 rpl-24.1
celegans	.(((((.(((..(((....((((((((((((.((((((((...))) ))))).)))))))))))).)))))))))))	0.750 -29.20
cremanei	.......(((..((((.(((((.((((............))))..))).. )).))))..)))	0.562 -11.60

celegans	chromosome:I:4585899:4585974:1	Same_strand\|Intronic_coding\|D1007.12.1\|D1007.12 ## D1007.12\|protein_coding\|rpl-24.1\|rpl-24.1 encodes a large ribosomal subunit L24 protein. [Source: WormBase] ## {SimpF: CEOP1188 1 Operon,WRM067cA07 1 fosmid,D1007.12 1 Expression_profile} ## {MIR: cel-mir-353}
cremanei	chromosome:chrUn:104979613:104979728:-1	Opposite_strand\|Boundary_coding\|NM_061183